Evidence map›Paper›PMID 37930839›Full record

ArticleMedical mycology2023

Occurrence of Aspergillus fumigatus azole resistance in soils from Switzerland.

Stéphanie Schürch, Katia Gindro, Sylvain Schnee, Pierre-Henri Dubuis, Josep Massana Codina, Matthieu Wilhelm, Arnaud Riat, Frédéric Lamoth, Dominique Sanglard

Open access · hybridAbstract read
In one paragraph

Article in Medical mycology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed, 1 pooled it
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 1 synthesis or guideline pooled it, 13 citations in OpenAlex.

  1. Guideline
  2. Global epidemiology of azole resistance inJAC-antimicrobial resistance · 2026
    Review
  3. Article
  4. Article
  5. Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Stéphanie SchürchPlant Protection Research Division, Mycology Group, Agroscope, 1260 Nyon, Switzerland.
Katia GindroPlant Protection Research Division, Mycology Group, Agroscope, 1260 Nyon, Switzerland.
Sylvain SchneePlant Protection Research Division, Mycology Group, Agroscope, 1260 Nyon, Switzerland.
Pierre-Henri DubuisPlant Protection Research Division, Mycology Group, Agroscope, 1260 Nyon, Switzerland.
Josep Massana CodinaPlant Protection Research Division, Mycology Group, Agroscope, 1260 Nyon, Switzerland.
Matthieu WilhelmPlant Protection Research Division, Mycology Group, Agroscope, 1260 Nyon, Switzerland.
Arnaud RiatService of Infectious Diseases and Service of Laboratory Medicine, Geneva University Hospitals and Geneva University, 1205 Geneva, Switzerland.
Frédéric LamothInfectious Diseases Service, Department of Medicine, Lausanne University Hospital and University of Lausanne, 1011 Lausanne, Switzerland.ORCID 0000-0002-1023-5597
Dominique SanglardInstitute of Microbiology, Lausanne University Hospital and University of Lausanne, 1011 Lausanne, Switzerland.ORCID 0000-0002-5244-4178
Agroscope · CHUniversity of Lausanne · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Aspergillus fumigatus is a fungal species causing diverse diseases in humans. The use of azoles for treatments of A. fumigatus diseases has resulted in azole resistance. Azoles are also widely used in the environment for crop protection, which resulted in azole resistance. Resistance is primarily due to mutations in cyp51A, which encodes the target protein for azoles. Here we addressed the occurrence of azole resistance in soils from a vast part of Switzerland. We aimed to associate the use of azoles in the environment with the occurrence of azole resistance. We targeted sample sites from different agricultural environments as well as sites with no agricultural practice (natural sites and urban sites). Starting from 327 sites, 113 A. fumigatus isolates were recovered (2019-2021), among which 19 were azole-resistant (15 with TR34/L98H and four with TR46/Y121F/T289A resistance mutations in cyp51A). Our results show that azole resistance was not associated with a specific agricultural practice. Azoles could be chemically detected in investigated soils, however, their presence was not associated with the occurrence of azole-resistant isolates. Interestingly, genetic markers of resistance to other fungicides were detected but only in azole-resistant isolates, thus reinforcing the notion that A. fumigatus cross-resistance to fungicides has an environmental origin. In conclusion, this study reveals the spreading of azole resistance in A. fumigatus from the environment in Switzerland. The proximity of agricultural areas to urban centers may facilitate the transmission of resistant strains to at-risk populations. Thus, vigilant surveillance is required to maintain effective treatment options for aspergillosis.

Indexed as

Aspergillus fumigatusFungicides, IndustrialAntifungal AgentsAzolesDrug Resistance, FungalFungal ProteinsHumansMicrobial Sensitivity TestsSoilSwitzerlandAntifungal AgentsAzolesFungal ProteinsFungicides, IndustrialSoilAspergillusazolesfungicidesresistance

Identifiers

PMID37930839
PMCPMC10653585
OpenAlexW4388409317

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.