Evidence map›Paper›PMID 37930833›Full record

ArticleNucleic acids research2023

Guanine-containing ssDNA and RNA induce dimeric and tetrameric structural forms of SAMHD1.

Benjamin Orris, Min Woo Sung, Shridhar Bhat, Yingrong Xu, Kevin W Huynh, Seungil Han, Darren C Johnson, Benedikt Bosbach, David J Shields, James T Stivers

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.9field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Transition metal activation reframes SAMHD1 regulation.bioRxiv : the preprint server for biology · 2026
    Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Benjamin OrrisDepartment of Pharmacology and Molecular Sciences, Johns Hopkins University School of Medicine 725 North Wolfe Street Baltimore, MD 21205, USA.ORCID 0000-0003-4961-0398
Min Woo SungMedicine Design, Pfizer, Groton, CT 06340, USA.
Shridhar BhatDepartment of Pharmacology and Molecular Sciences, Johns Hopkins University School of Medicine 725 North Wolfe Street Baltimore, MD 21205, USA.
Yingrong XuMedicine Design, Pfizer, Groton, CT 06340, USA.
Kevin W HuynhMedicine Design, Pfizer, Groton, CT 06340, USA.
Seungil HanMedicine Design, Pfizer, Groton, CT 06340, USA.
Darren C JohnsonCenters for Therapeutic Innovation (CTI), Pfizer, New York, NY 10016, USA.
Benedikt BosbachCenters for Therapeutic Innovation (CTI), Pfizer, New York, NY 10016, USA.
David J ShieldsCenters for Therapeutic Innovation (CTI), Pfizer, New York, NY 10016, USA.
James T StiversDepartment of Pharmacology and Molecular Sciences, Johns Hopkins University School of Medicine 725 North Wolfe Street Baltimore, MD 21205, USA.ORCID 0000-0003-2572-7807
Pfizer (United States) · USJohns Hopkins University · US

Funding

TRAINING IN AREAS FUNDAMENTAL TO CANCER RESEARCHT32CA009110 · NCI · JOHNS HOPKINS UNIVERSITY · PI MATUNIS, MICHAEL J., WEERARATNA, ASHANI T · 1985 to 2025
$13.1M
Uracil Damage Recognition by Uracil DNA GlyocosylaseR01GM056834 · NIGMS · UNIVERSITY OF MD BIOTECHNOLOGY INSTITUTE · PI STIVERS, JAMES T. · 1998 to 2021
$8.3M
Discovery of Chemical Probes of SAMHD1 for Modulation of Cancer Therapy and the Immune SystemR01CA233567 · NCI · JOHNS HOPKINS UNIVERSITY · PI STIVERS, JAMES T. · 2020 to 2023
$1.5M
NCI NIH HHS R01 CA233567NCI NIH HHS T32CA009NCI NIH HHS T32 CA009110NIGMS NIH HHS R01 GM056834NIH HHS R01 GM056834
6 · The paper itself

Abstract

The dNTPase activity of tetrameric SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 (SAMHD1) plays a critical role in cellular dNTP regulation. SAMHD1 also associates with stalled DNA replication forks, DNA repair foci, ssRNA and telomeres. The above functions require nucleic acid binding by SAMHD1, which may be modulated by its oligomeric state. Here we establish in cryo-EM and biochemical studies that the guanine-specific A1 activator site of each SAMHD1 monomer is used to target the enzyme to guanine nucleotides within single-stranded (ss) DNA and RNA. Remarkably, nucleic acid strands containing a single guanine base induce dimeric SAMHD1, while two or more guanines with ∼20 nucleotide spacing induce a tetrameric form. A cryo-EM structure of ssRNA-bound tetrameric SAMHD1 shows how ssRNA strands bridge two SAMHD1 dimers and stabilize the structure. This ssRNA-bound tetramer is inactive with respect to dNTPase and RNase activity.

Indexed as

Monomeric GTP-Binding ProteinsRNAGuanineNucleotidesPolymersSAM Domain and HD Domain-Containing Protein 1GuanineMonomeric GTP-Binding ProteinsNucleotidesPolymersRNASAM Domain and HD Domain-Containing Protein 1SAMHD1 protein, human

Identifiers

PMID37930833
PMCPMC10711556
OpenAlexW4388410088

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.