Evidence map›Paper›PMID 37926713›Full record

ArticleEuropean journal of human genetics : EJHG2024

Biallelic ATP2B1 variants as a likely cause of a novel neurodevelopmental malformation syndrome with primary hypoparathyroidism.

Patrick Yap, Lisa G Riley, Purvi M Kakadia, Stefan K Bohlander, Ben Curran, Meer Jacob Rahimi, Salam Alburaiky, Ian Hayes, Henry Oppermann, Cristin Print and 2 more

Open access · hybridAbstract read
In one paragraph

Article in European journal of human genetics : EJHG, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed, 1 pooled it
1.2field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 1 synthesis or guideline pooled it, 8 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. A novelExperimental biology and medicine (Maywood, N.J.) · 2026
    Article
  5. Looking back at 2024 in the European Journal of Human Genetics.European journal of human genetics : EJHG · 2025
    Article
  6. Article
  7. Managing genetic information sharing at family and population level.European journal of human genetics : EJHG · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 3 countries.

Patrick YapDepartment of Molecular Medicine and Pathology, University of Auckland, Auckland, New Zealand. patricky@adhb.govt.nz.ORCID 0000-0002-4372-0580
Lisa G RileyRare Diseases Functional Genomics, Kids Research, The Children's Hospital at Westmead and The Children's Medical Research Institute, Sydney, NSW, 2145, Australia.
Purvi M KakadiaDepartment of Molecular Medicine and Pathology, University of Auckland, Auckland, New Zealand.
Stefan K BohlanderDepartment of Molecular Medicine and Pathology, University of Auckland, Auckland, New Zealand.ORCID 0000-0002-2202-9088
Ben CurranDepartment of Molecular Medicine and Pathology, University of Auckland, Auckland, New Zealand.
Meer Jacob RahimiInstitute of Human Genetics, University of Leipzig Hospitals and Clinics, Leipzig, 04103, Germany.ORCID 0000-0003-3396-9611
Salam AlburaikyGenetic Health Service New Zealand - Northern hub, Auckland, New Zealand.
Ian HayesGenetic Health Service New Zealand - Northern hub, Auckland, New Zealand.
Henry OppermannInstitute of Human Genetics, University of Leipzig Hospitals and Clinics, Leipzig, 04103, Germany.
Cristin PrintDepartment of Molecular Medicine and Pathology, University of Auckland, Auckland, New Zealand.
Sandra T Cooper *Specialty of Child & Adolescent Health, Sydney Medical School, University of Sydney, Sydney, NSW, 2006, Australia.ORCID 0000-0002-7314-5097
Polona Le Quesne Stabej *Department of Molecular Medicine and Pathology, University of Auckland, Auckland, New Zealand.ORCID 0000-0002-9436-5857
University of Auckland · NZThe University of Sydney · AUUniversity Hospital Leipzig · DEStatistics New Zealand · NZ

Funding

Department of Health | National Health and Medical Research Council (NHMRC) APP1136197
6 · The paper itself

Abstract

ATP2B1 encodes plasma membrane calcium-transporting-ATPase1 and plays an essential role in maintaining intracellular calcium homeostasis that regulates diverse signaling pathways. Heterozygous de novo missense and truncating ATP2B1 variants are associated with a neurodevelopmental phenotype of variable expressivity. We describe a proband with distinctive craniofacial gestalt, Pierre-Robin sequence, neurodevelopmental and growth deficit, periventricular heterotopia, brachymesophalangy, cutaneous syndactyly, and persistent hypocalcemia from primary hypoparathyroidism. Proband-parent trio exome sequencing identified compound heterozygous ATP2B1 variants: a maternally inherited splice-site (c.3060+2 T > G) and paternally inherited missense c.2938 G > T; p.(Val980Leu). Reverse-transcription-PCR on the proband's fibroblast-derived mRNA showed aberrantly spliced ATP2B1 transcripts targeted for nonsense-mediated decay. All correctly-spliced ATP2B1 mRNA encoding p.(Val980Leu) functionally causes decreased cellular Ca

Indexed as

CalciumHypoparathyroidismGenotypeHumansPhenotypePlasma Membrane Calcium-Transporting ATPasesRNA, MessengerATP2B1 protein, humanCalciumPlasma Membrane Calcium-Transporting ATPasesRNA, Messenger

Identifiers

PMID37926713
PMCPMC10772071
OpenAlexW4388398700

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.