Evidence map›Paper›PMID 37926145›Full record

ArticleJournal of advanced research2024

Modulation of warm temperature-sensitive growth using a phytochrome B dark reversion variant, phyB[G515E], in Arabidopsis and rice.

Jin Jeon, Md Mizanor Rahman, Hee Wook Yang, Jaewook Kim, Ho-Jun Gam, Ji Young Song, Seok Won Jeong, Jeong-Il Kim, Myoung-Goo Choi, Dong-Ho Shin and 6 more

Open access · goldAbstract read
In one paragraph

Article in Journal of advanced research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
2.0field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

  1. Genetic diversity, GWAS, and candidate genes identification for plant architecture traits in maize (Zea mays L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 4 institutions in 1 country.

Jin JeonDepartment of Biological Sciences, Chungnam National University, Daejeon 34134, Republic of Korea.
Md Mizanor RahmanGraduate School of Green-Bio Science and Crop Biotech Institute, Kyung Hee University, Yongin 17104, Republic of Korea.
Hee Wook YangDepartment of Biological Sciences, Chungnam National University, Daejeon 34134, Republic of Korea.
Jaewook KimDepartment of Biological Sciences, Chungnam National University, Daejeon 34134, Republic of Korea.
Ho-Jun GamDepartment of Applied Biosciences, Kyungpook National University, Daegu 41566, Republic of Korea.
Ji Young SongDepartment of Biological Sciences, Chungnam National University, Daejeon 34134, Republic of Korea.
Seok Won JeongDepartment of Biological Sciences, Chungnam National University, Daejeon 34134, Republic of Korea.
Jeong-Il KimDepartment of Molecular Biotechnology and Kumho Life Science Laboratory, Chonnam National University, Gwangju 61186, Republic of Korea.
Myoung-Goo ChoiNational Institute of Crop Science, Rural Development Administration, Wanju 55365, Republic of Korea.
Dong-Ho ShinDepartment of Biological Sciences, Chungnam National University, Daejeon 34134, Republic of Korea.
Giltsu ChoiDepartment of Biological Sciences, Korea Advanced Institute of Science and Technology, Daejeon 34141, Republic of Korea.
Donghwan ShimDepartment of Biological Sciences, Chungnam National University, Daejeon 34134, Republic of Korea.
Jae-Hoon JungDepartment of Biological Sciences, Sungkyunkwan University, Suwon 16419, Republic of Korea.
In-Jung LeeDepartment of Applied Biosciences, Kyungpook National University, Daegu 41566, Republic of Korea.
Jong-Seong JeonGraduate School of Green-Bio Science and Crop Biotech Institute, Kyung Hee University, Yongin 17104, Republic of Korea. Electronic address: jjeon@khu.ac.kr.
Youn-Il ParkDepartment of Biological Sciences, Chungnam National University, Daejeon 34134, Republic of Korea. Electronic address: yipark@cnu.ac.kr.
Chungnam National University · KRChonnam National University · KRKorea Advanced Institute of Science and Technology · KRKyungpook National University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

introductionAmbient temperature-induced hypocotyl elongation in Arabidopsis seedlings is sensed by the epidermis-localized phytochrome B (phyB) and transduced into auxin biosynthesis via a basic helix-loop-helix transcription factor, phytochrome-interacting factor 4 (PIF4). Once synthesized, auxin travels down from the cotyledons to the hypocotyl, triggering hypocotyl cell elongation. Thus, the phyB-PIF4 module involved in thermosensing and signal transduction is a potential genetic target for engineering warm temperature-insensitive plants.

objectivesThis study aims to manipulate warm temperature-induced elongation of plants at the post-translational level using phyB variants with dark reversion, the expression of which is subjected to heat stress.

methodsThe thermosensitive growth response of Arabidopsis was manipulated by expressing the single amino acid substitution variant of phyB (phyB[G515E]), which exhibited a lower dark reversion rate than wild-type phyB. Other variants with slow (phyB[G564E]) or rapid (phyB[S584F]) dark reversion or light insensitivity (phyB[G767R]) were also included in this study for comparison. Warming-induced transient expression of phyB variants was achieved using heat shock-inducible promoters. Arabidopsis PHYB[G515E] and PHYB[G564E] were also constitutively expressed in rice in an attempt to manipulate the heat sensitivity of a monocotyledonous plant species.

resultsAt an elevated temperature, Arabidopsis seedlings transiently expressing PHYB[G515E] under the control of a heat shock-inducible promoter exhibited shorter hypocotyls than those expressing PHYB and other PHYB variant genes. This warm temperature-insensitive growth was related to the lowered PIF4 and auxin responses. In addition, transgenic rice seedlings expressing Arabidopsis PHYB[G515E] and PHYB[G564E] showed warm temperature-insensitive shoot growth.

conclusionTransient expression of phyB variants with altered dark reversion rates could serve as an effective optogenetic technique for manipulating PIF4-auxin-mediated thermomorphogenic responses in plants.

Indexed as

ArabidopsisGene Expression Regulation, PlantHypocotylOryzaPhytochrome BPlants, Genetically ModifiedArabidopsis ProteinsBasic Helix-Loop-Helix ProteinsHot TemperatureIndoleacetic AcidsSeedlingsSignal TransductionTemperatureArabidopsis ProteinsBasic Helix-Loop-Helix ProteinsIndoleacetic AcidsPHYB protein, ArabidopsisPhytochrome BPIF4 protein, ArabidopsisArabidopsisHeat shock-inducible promotersPhytochrome B dark reversion variantsPIF4RiceThermomorphogenic response

Identifiers

PMID37926145
PMCPMC11379985
OpenAlexW4388346832

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.