Evidence map›Paper›PMID 37925790›Full record

ArticleThe New phytologist2024

Stochastic organelle genome segregation through Arabidopsis development and reproduction.

Amanda K Broz, Daniel B Sloan, Iain G Johnston

Abstract read
In one paragraph

Article in The New phytologist, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Review
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  14. Expansion of the MutS Gene Family in Plants.bioRxiv : the preprint server for biology · 2024
    Article
  15. Article
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Amanda K BrozDepartment of Biology, Colorado State University, Fort Collins, CO, 80523, USA.ORCID 0000-0001-5663-3569
Daniel B SloanDepartment of Biology, Colorado State University, Fort Collins, CO, 80523, USA.ORCID 0000-0002-3618-0897
Iain G JohnstonDepartment of Mathematics, University of Bergen, Bergen, 5007, Norway.ORCID 0000-0001-8559-3519

Funding

Mechanisms of mitochondrial mutation rate variation across eukaryotesR35GM148134 · NIGMS · COLORADO STATE UNIVERSITY · PI Daniel Benjamin Sloan · 2023 to 2026
$1.7M
Causes of Extreme Mitochondrial Mutation Rate VariationR01GM118046 · NIGMS · COLORADO STATE UNIVERSITY · PI SLOAN, DANIEL BENJAMIN · 2017 to 2021
$1.5M
NIGMS NIH HHS R35 GM148134NIH HHS GM118046
6 · The paper itself

Abstract

Organelle DNA (oDNA) in mitochondria and plastids is vital for plant (and eukaryotic) life. Selection against damaged oDNA is mediated in part by segregation - sorting different oDNA types into different cells in the germline. Plants segregate oDNA very rapidly, with oDNA recombination protein MSH1 a key driver of this segregation, but we have limited knowledge of the dynamics of this segregation within plants and between generations. Here, we reveal how oDNA evolves through Arabidopsis thaliana development and reproduction. We combine stochastic modelling, Bayesian inference, and model selection with new and existing tissue-specific oDNA measurements from heteroplasmic Arabidopsis plant lines through development and between generations. Segregation proceeds gradually but continually during plant development, with a more rapid increase between inflorescence formation and the next generation. When MSH1 is compromised, the majority of observed segregation can be achieved through partitioning at cell divisions. When MSH1 is functional, mtDNA segregation is far more rapid; we show that increased oDNA gene conversion is a plausible mechanism quantitatively explaining this acceleration. These findings reveal the quantitative, time-dependent details of oDNA segregation in Arabidopsis. We also discuss the support for different models of the plant germline provided by these observations.

Indexed as

ArabidopsisArabidopsis ProteinsBayes TheoremDNA, MitochondrialMitochondriaMutS DNA Mismatch-Binding ProteinPlantsPlastidsReproductionArabidopsis ProteinsDNA, MitochondrialMSH1 protein, ArabidopsisMutS DNA Mismatch-Binding ProteinArabidopsisbottleneckchloroplastsdevelopmentinheritancemitochondriaorganelle DNAsegregation

Identifiers

PMID37925790
PMCPMC10841260

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.