Evidence map›Paper›PMID 37925205›Full record

ArticleArtificial intelligence in medicine2023

Predicting kidney transplant survival using multiple feature representations for HLAs.

Mohammadreza Nemati, Haonan Zhang, Michael Sloma, Dulat Bekbolsynov, Hong Wang, Stanislaw Stepkowski, Kevin S Xu

Abstract read
In one paragraph

Article in Artificial intelligence in medicine, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Mohammadreza NematiDepartment of Electrical Engineering and Computer Science, University of Toledo, 2801 W Bancroft St, Toledo, 43606, OH, United States; Department of Computer and Data Sciences, Case Western Reserve University, 10900 Euclid Ave, Cleveland, 44106, OH, United States.
Haonan ZhangDepartment of Electrical Engineering and Computer Science, University of Toledo, 2801 W Bancroft St, Toledo, 43606, OH, United States.
Michael SlomaDepartment of Electrical Engineering and Computer Science, University of Toledo, 2801 W Bancroft St, Toledo, 43606, OH, United States.
Dulat BekbolsynovDepartment of Medical Microbiology and Immunology, University of Toledo, United States.
Hong WangDepartment of Engineering Technology, University of Toledo, United States.
Stanislaw StepkowskiDepartment of Medical Microbiology and Immunology, University of Toledo, United States.
Kevin S XuDepartment of Electrical Engineering and Computer Science, University of Toledo, 2801 W Bancroft St, Toledo, 43606, OH, United States; Department of Computer and Data Sciences, Case Western Reserve University, 10900 Euclid Ave, Cleveland, 44106, OH, United States. Electronic address: ksx2@case.edu.

Funding

Machine Learning and Network Science for Predicting Kidney Transplant Survival R01LM013311 · NLM · UNIVERSITY OF TOLEDO · PI STEPKOWSKI, STANISLAW M, XU, KEVIN SHUAI · 2019 to 2021
$830k
NLM NIH HHS R01 LM013311
6 · The paper itself

Abstract

Kidney transplantation can significantly enhance living standards for people suffering from end-stage renal disease. A significant factor that affects graft survival time (the time until the transplant fails and the patient requires another transplant) for kidney transplantation is the compatibility of the Human Leukocyte Antigens (HLAs) between the donor and recipient. In this paper, we propose 4 new biologically-relevant feature representations for incorporating HLA information into machine learning-based survival analysis algorithms. We evaluate our proposed HLA feature representations on a database of over 100,000 transplants and find that they improve prediction accuracy by about 1%, modest at the patient level but potentially significant at a societal level. Accurate prediction of survival times can improve transplant survival outcomes, enabling better allocation of donors to recipients and reducing the number of re-transplants due to graft failure with poorly matched donors.

Indexed as

Kidney TransplantationGraft SurvivalHLA AntigensHumansLiving DonorsSurvival AnalysisHLA AntigensFeature extractionGraft survivalHuman Leukocyte AntigensSurvival analysisTarget encoding

Identifiers

PMID37925205
PMCPMC10970101

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.