Evidence map›Paper›PMID 37923990›Full record

ArticleBMC genomic data2023

Genome sequence resource for "Candidatus Liberibacter asiaticus" strain GDCZ from a historical HLB endemic region in China.

Yongqin Zheng, Yun Li, Pengbin Xu, Chaoji Liu, Jianchi Chen, Xiaoling Deng, Zheng Zheng

Abstract read
In one paragraph

Article in BMC genomic data, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Yongqin Zheng *National Key Laboratory of Green Pesticide, South China Agricultural University, Guangzhou, Guangdong, China.
Yun Li *National Key Laboratory of Green Pesticide, South China Agricultural University, Guangzhou, Guangdong, China.
Pengbin XuChaozhou Fruit Research Institute, Chaozhou, Guangdong, China.
Chaoji LiuNational Key Laboratory of Green Pesticide, South China Agricultural University, Guangzhou, Guangdong, China.
Jianchi ChenSan Joaquin Valley Agricultural Sciences Center, Agricultural Research Service, United States Department of Agriculture, Parlier, CA, USA.
Xiaoling DengNational Key Laboratory of Green Pesticide, South China Agricultural University, Guangzhou, Guangdong, China. xldeng@scau.edu.cn.
Zheng ZhengNational Key Laboratory of Green Pesticide, South China Agricultural University, Guangzhou, Guangdong, China. zzheng@scau.edu.cn.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectives"Candidatus Liberibacter asiaticus" (CLas) is an un-culturable α-proteobacterium that caused citrus Huanglongbing (HLB), a destructive disease threatening citrus production worldwide. In China, the presence of HLB was first reported in Chaoshan region of Guangdong province, China around a century ago. Thus, whole genome information of CLas strains from Chaoshan area become the most important resource to understand the population diversity and evaluation of CLas in China. DATA DESCRIPTION: CLas strain GDCZ was originally from Chaozhou city (Chaoshan area) and sequenced using PacBio Sequel long-read sequencing and Illumina short-read sequencing. The genome of strain GDCZ comprised of 1,230,507 bp with an average G + C content of 36.4%, along with a circular CLasMV1 phage: CLasMV1_GDCZ (8,869 bp). The CLas strain GDCZ contained a Type 2 prophage (37,452 bp) and encoded a total of 1,057 open reading frames and 53 RNA genes. The whole genome sequence of CLas strain GDCZ from the historical HLB endemic region in China will serve as a useful resource for further analyses of CLas evolution and HLB epidemiology in China and world.

Indexed as

LiberibacterRhizobiaceaeChinaHigh-Throughput Nucleotide SequencingProphagesCandidatus Liberibacter asiaticusHistorical originHuanglongbingPacBio long-read sequencing

Identifiers

PMID37923990
PMCPMC10625202

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.