Evidence map›Paper›PMID 37923988›Full record

ArticleBMC cancer2023

A deep-learning approach for segmentation of liver tumors in magnetic resonance imaging using UNet+.

Jing Wang, Yanyang Peng, Shi Jing, Lujun Han, Tian Li, Junpeng Luo

Open access · goldAbstract read
In one paragraph

Article in BMC cancer, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed, 1 pooled it
11.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 1 synthesis or guideline pooled it, 52 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Jing WangDepartment of General medicine, The First Medical Center Department of Chinese PLA General Hospital, Peking, 100039, China.
Yanyang PengDepartment of Radiology, First Medical Center of General Hospital of People's Liberation Army, Peking, China.
Shi JingDepartment of Oncology, Huaihe Hospital, Henan University, Kaifeng, 475000, China.
Lujun HanDepartment of Radiology, State Key Laboratory of Oncology in South China, Collaborative Innovation Cancer for Cancer Medicine, Sun Yat-sen University Cancer Center, Guangzhou, 510030, China. hanlj@sysucc.org.cn.
Tian LiSchool of Basic Medicine, Fourth Military Medical University, Xi'an, 710032, China. tian@fmmu.edu.cn.
Junpeng LuoTranslational Medical Center of Huaihe Hospital, Henan University, 115 West Gate Street, Kaifeng, 475000, China. hiccp@henu.edu.cn.
Henan University Huaihe Hospital and Huaihe Clinical Institute · CNAir Force Medical University · CNChinese PLA General Hospital · CNSun Yat-sen University Cancer Center · CN

Funding

Scientific research project of Guangdong Provincial Administration of Traditional Chinese Medicine 20211076
6 · The paper itself

Abstract

objectiveRadiomic and deep learning studies based on magnetic resonance imaging (MRI) of liver tumor are gradually increasing. Manual segmentation of normal hepatic tissue and tumor exhibits limitations.

methods105 patients diagnosed with hepatocellular carcinoma were retrospectively studied between Jan 2015 and Dec 2020. The patients were divided into three sets: training (n = 83), validation (n = 11), and internal testing (n = 11). Additionally, 9 cases were included from the Cancer Imaging Archive as the external test set. Using the arterial phase and T2WI sequences, expert radiologists manually delineated all images. Using deep learning, liver tumors and liver segments were automatically segmented. A preliminary liver segmentation was performed using the UNet + + network, and the segmented liver mask was re-input as the input end into the UNet + + network to segment liver tumors. The false positivity rate was reduced using a threshold value in the liver tumor segmentation. To evaluate the segmentation results, we calculated the Dice similarity coefficient (DSC), average false positivity rate (AFPR), and delineation time.

resultsThe average DSC of the liver in the validation and internal testing sets was 0.91 and 0.92, respectively. In the validation set, manual and automatic delineation took 182.9 and 2.2 s, respectively. On an average, manual and automatic delineation took 169.8 and 1.7 s, respectively. The average DSC of liver tumors was 0.612 and 0.687 in the validation and internal testing sets, respectively. The average time for manual and automatic delineation and AFPR in the internal testing set were 47.4 s, 2.9 s, and 1.4, respectively, and those in the external test set were 29.5 s, 4.2 s, and 1.6, respectively.

conclusionUNet + + can automatically segment normal hepatic tissue and liver tumors based on MR images. It provides a methodological basis for the automated segmentation of liver tumors, improves the delineation efficiency, and meets the requirement of extraction set analysis of further radiomics and deep learning.

Indexed as

Deep LearningLiver NeoplasmsHumansImage Processing, Computer-AssistedMagnetic Resonance ImagingRetrospective StudiesDeep learningHepatocellular CarcinomaMagnetic resonance imagingRadiomicsSegmentationUNet++

Identifiers

PMID37923988
PMCPMC10623778
OpenAlexW4388293201

What OpenQuestion holds

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LicenceCC BY
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.