Evidence map›Paper›PMID 37923771›Full record

ArticleNature communications2023

Regulation of eDHFR-tagged proteins with trimethoprim PROTACs.

Jean M Etersque, Iris K Lee, Nitika Sharma, Kexiang Xu, Andrew Ruff, Justin D Northrup, Swarbhanu Sarkar, Tommy Nguyen, Richard Lauman, George M Burslem and 1 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 16 citations in OpenAlex.

  1. Tricarbonyl Rhenium-Based PROTACs Degrade the SARS-CoV-2 Mpro Protease.Chemistry (Weinheim an der Bergstrasse, Germany) · 2026
    Article
  2. First-in-Human Biodistribution and Dosimetry of [Molecular imaging and biology · 2026
    Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. A genetically encoded protein tag for control and quantitative imaging of CAR T cell therapy.Molecular therapy : the journal of the American Society of Gene Therapy · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Jean M Etersque *Department of Radiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.ORCID 0000-0002-1206-2239
Iris K Lee *Department of Radiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Nitika Sharma *Department of Radiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Kexiang XuDepartment of Radiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Andrew RuffDepartment of Radiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Justin D NorthrupDepartment of Radiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.ORCID 0000-0001-6325-4946
Swarbhanu SarkarDepartment of Radiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Tommy NguyenDepartment of Radiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.ORCID 0000-0003-2588-1329
Richard LaumanThe Department of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
George M BurslemThe Department of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.ORCID 0000-0002-2812-983X
Mark A SellmyerDepartment of Radiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA. mark.sellmyer@pennmedicine.upenn.edu.ORCID 0000-0002-1407-1905
University of Pennsylvania · US

Funding

Editing Acetylation and Protein HomeostasisR35GM142505 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI George Burslem · 2021 to 2026
$2.7M
Regulation of eDHFR-tagged proteins with trimethoprim PROTACsR01GM150804 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI Mark A Sellmyer · 2023 to 2026
$2.4M
Next generation tools for imaging bacterial infection and its relationship to the immune systemDP5OD026386 · OD · UNIVERSITY OF PENNSYLVANIA · PI SELLMYER, MARK A · 2018 to 2022
$2.0M
Developing a genetic tag for in vivo protein regulation using PROTACs with companion PET imagingF31CA275040 · NCI · UNIVERSITY OF PENNSYLVANIA · PI ETERSQUE, JEAN MARIE · 2022 to 2023
$75k
NCI NIH HHS F31 CA275040NIGMS NIH HHS R01 GM150804NIGMS NIH HHS R35 GM142505NIH HHS DP5 OD026386
6 · The paper itself

Abstract

Temporal control of protein levels in cells and living animals can be used to improve our understanding of protein function. In addition, control of engineered proteins could be used in therapeutic applications. PRoteolysis-TArgeting Chimeras (PROTACs) have emerged as a small-molecule-driven strategy to achieve rapid, post-translational regulation of protein abundance via recruitment of an E3 ligase to the target protein of interest. Here, we develop several PROTAC molecules by covalently linking the antibiotic trimethoprim (TMP) to pomalidomide, a ligand for the E3 ligase, Cereblon. These molecules induce degradation of proteins of interest (POIs) genetically fused to a small protein domain, E. coli dihydrofolate reductase (eDHFR), the molecular target of TMP. We show that various eDHFR-tagged proteins can be robustly degraded to 95% of maximum expression with PROTAC molecule 7c. Moreover, TMP-based PROTACs minimally affect the expression of immunomodulatory imide drug (IMiD)-sensitive neosubstrates using proteomic and biochemical assays. Finally, we show multiplexed regulation with another known degron-PROTAC pair, as well as reversible protein regulation in a rodent model of metastatic cancer, demonstrating the formidable strength of this system. Altogether, TMP PROTACs are a robust approach for selective and reversible degradation of eDHFR-tagged proteins in vitro and in vivo.

Indexed as

Escherichia coli ProteinsTetrahydrofolate DehydrogenaseAnimalsEscherichia coliProteolysisProteolysis Targeting ChimeraProteomicsTrimethoprimUbiquitin-Protein LigasesEscherichia coli ProteinsProteolysis Targeting ChimeraTetrahydrofolate DehydrogenaseTrimethoprimUbiquitin-Protein Ligases

Identifiers

PMID37923771
PMCPMC10624689
OpenAlexW4388282992

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.