Evidence map›Paper›PMID 37922916›Full record

ArticleStem cell reports2023

Identification of glioblastoma stem cell-associated lncRNAs using single-cell RNA sequencing datasets.

Rasmani Hazra, Raditya Utama, Payal Naik, Alexander Dobin, David L Spector

Open access · goldAbstract read
In one paragraph

Article in Stem cell reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.2field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Rasmani HazraCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA. Electronic address: rhazra@cshl.edu.
Raditya UtamaCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.
Payal NaikCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.
Alexander DobinCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.
David L SpectorCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA. Electronic address: spector@cshl.edu.
Cold Spring Harbor Laboratory · US

Funding

Single-Cell Biology Shared ResourceP30CA045508 · NCI · COLD SPRING HARBOR LABORATORY · PI David A Tuveson · 1987 to 2026
$118.9M
VIRAL TRANSACTIVATIONP01CA013106 · NCI · COLD SPRING HARBOR LABORATORY · PI William Richard McCombie · 1985 to 2026
$116.8M
Novel algorithm development, user support and maintenance for STARR01HG009318 · NHGRI · COLD SPRING HARBOR LABORATORY · PI DOBIN, ALEXANDER · 2017 to 2021
$2.4M
Graphical Processing Units and a Large-Memory Compute Node for Applications in Genomics, Neuroscience, and Structural BiologyS10OD028632 · OD · COLD SPRING HARBOR LABORATORY · PI SIEPEL, ADAM CHARLES · 2020 to 2020
$437k
NCI NIH HHS P01 CA013106NCI NIH HHS P30 CA045508NHGRI NIH HHS R01 HG009318NIH HHS S10 OD028632
6 · The paper itself

Abstract

Glioblastoma multiforme (GBM) is an aggressive, heterogeneous brain tumor in which glioblastoma stem cells (GSCs) are known culprits of therapy resistance. Long non-coding RNAs (lncRNAs) have been shown to play a critical role in both cancer and normal biology. A few studies have suggested that aberrant expression of lncRNAs is associated with GSCs. However, a comprehensive single-cell analysis of the GSC-associated lncRNA transcriptome has not been carried out. Here, we analyzed recently published single-cell RNA sequencing datasets of adult GBM tumors, GBM organoids, GSC-enriched GBM tumors, and developing human brain samples to identify lncRNAs highly expressed in GSCs. We further revealed that the GSC-specific lncRNAs GIHCG and LINC01563 promote proliferation, migration, and stemness in the GSC population. Together, this study identified a panel of uncharacterized GSC-enriched lncRNAs and set the stage for future in-depth studies to examine their role in GBM pathology and their potential as biomarkers and/or therapeutic targets in GBM.

Indexed as

Brain NeoplasmsGlioblastomaRNA, Long NoncodingAdultCell Line, TumorGene Expression Regulation, NeoplasticHumansNeoplastic Stem CellsSequence Analysis, RNARNA, Long Noncodingglioblastomaglioblastoma stem celllncRNAradial glialsingle-cell RNA sequencing

Identifiers

PMID37922916
PMCPMC10679778
OpenAlexW4388233383

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.