Evidence map›Paper›PMID 37921330›Full record

ArticleThe EMBO journal2023

Assembly and function of the amyloid-like translational repressor Rim4 is coupled with nutrient conditions.

Diana Sm Ottoz, Lauren C Tang, Annie E Dyatel, Marko Jovanovic, Luke E Berchowitz

Open access · hybridAbstract read
In one paragraph

Article in The EMBO journal, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.9field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Membrane and organelle rearrangement during ascospore formation in budding yeast.Microbiology and molecular biology reviews : MMBR · 2024
    Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Diana Sm OttozDepartment of Genetics and Development, Hammer Health Sciences Center, Columbia University Irving Medical Center, New York, NY, USA.ORCID 0000-0003-0405-0323
Lauren C TangDepartment of Biological Sciences, Columbia University, New York, NY, USA.
Annie E DyatelDepartment of Genetics and Development, Hammer Health Sciences Center, Columbia University Irving Medical Center, New York, NY, USA.
Marko JovanovicDepartment of Biological Sciences, Columbia University, New York, NY, USA.
Luke E BerchowitzDepartment of Genetics and Development, Hammer Health Sciences Center, Columbia University Irving Medical Center, New York, NY, USA.ORCID 0000-0002-3388-7723
Columbia University · USColumbia University Irving Medical Center · USAllen Institute for Brain Science · US

Funding

Elucidation of regulation and function of amyloid-like assembliesR35GM124633 · NIGMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Luke E Berchowitz · 2017 to 2026
$4.2M
Extensive multiplexing of protein nucleic-acid interactions to comprehensively study gene expression regulation from chromatin to mRNA degradationR01HG012216 · NHGRI · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI GUTTMAN, MITCHELL, JOVANOVIC, MARKO · 2022 to 2025
$3.1M
Defining the programmed proteome rejuvenation underlying gametogenesisR01AG071869 · NIA · UNIVERSITY OF CALIFORNIA BERKELEY · PI BRAR, GLORIA ANN, JOVANOVIC, MARKO · 2021 to 2025
$2.9M
Regulation of Protein Production Dynamics:RNA Binding Proteins and the Ribosome CodeR35GM128802 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI JOVANOVIC, MARKO · 2018 to 2022
$2.3M
NHGRI NIH HHS R01 HG012216NIA NIH HHS R01 AG071869NIGMS NIH HHS R35 GM124633NIGMS NIH HHS R35 GM128802
6 · The paper itself

Abstract

Amyloid-like protein assemblies have been associated with toxic phenotypes because of their repetitive and stable structure. However, evidence that cells exploit these structures to control function and activity of some proteins in response to stimuli has questioned this paradigm. How amyloid-like assembly can confer emergent functions and how cells couple assembly with environmental conditions remains unclear. Here, we study Rim4, an RNA-binding protein that forms translation-repressing assemblies during yeast meiosis. We demonstrate that in its assembled and repressive state, Rim4 binds RNA more efficiently than in its monomeric and idle state, revealing a causal connection between assembly and function. The Rim4-binding site location within the transcript dictates whether the assemblies can repress translation, underscoring the importance of the architecture of this RNA-protein structure for function. Rim4 assembly depends exclusively on its intrinsically disordered region and is prevented by the Ras/protein kinase A signaling pathway, which promotes growth and suppresses meiotic entry in yeast. Our results suggest a mechanism whereby cells couple a functional protein assembly with a stimulus to enforce a cell fate decision.

Indexed as

Saccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsAmyloidogenic ProteinsMeiosisNutrientsRNARNA-Binding ProteinsAmyloidogenic ProteinsNutrientsRim4 protein, S cerevisiaeRNARNA-Binding ProteinsSaccharomyces cerevisiae Proteinsamyloid-like assembliesmeiosisnutrient signalingprotein translationRNA-binding proteins

Identifiers

PMID37921330
PMCPMC10690475
OpenAlexW4388291820

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.