Evidence map›Paper›PMID 37921263›Full record

ArticleJournal of cellular physiology2024

Combined analysis of secreted proteins and glycosylation identifies prognostic features in cholangiocarcinoma.

Diane Dayoung Park, Gege Xu, Simon S Park, Nathan E Haigh, Chatchai Phoomak, Sopit Wongkham, Emanual Maverakis, Carlito B Lebrilla

Open access · hybridAbstract read
In one paragraph

Article in Journal of cellular physiology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Diane Dayoung ParkDepartment of Chemistry, University of California, Davis, California, USA.ORCID 0000-0003-4983-4340
Gege XuDepartment of Chemistry, University of California, Davis, California, USA.
Simon S ParkDepartment of Surgery, Harvard Medical School, Beth Israel Deaconess Medical Center, Boston, Massachusetts, USA.
Nathan E HaighDepartment of Dermatology, Davis School of Medicine, University of California, Sacramento, California, USA.
Chatchai PhoomakDepartment of Biochemistry, Faculty of Medicine, Khon Kaen University, Khon Kaen, Thailand.
Sopit WongkhamDepartment of Biochemistry, Faculty of Medicine, Khon Kaen University, Khon Kaen, Thailand.
Emanual MaverakisDepartment of Dermatology, Davis School of Medicine, University of California, Sacramento, California, USA.
Carlito B LebrillaDepartment of Chemistry, University of California, Davis, California, USA.
University of California, Davis · USKhon Kaen University · THBeth Israel Deaconess Medical Center · US

Funding

Staff InvestigatorsP30CA093373 · NCI · UNIVERSITY OF CALIFORNIA DAVIS · PI Gina M Dayton · 2002 to 2026
$84.9M
The incorporation of human milk oligosaccharides in brain glycoconjugatesR01GM049077 · NIGMS · UNIVERSITY OF CALIFORNIA DAVIS · PI LEBRILLA, CARLITO B · 1999 to 2024
$6.3M
Mentoring Translational Scientists in Clinical Trial Immune MonitoringK24AR077313 · NIAMS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI MAVERAKIS, EMANUAL M. · 2021 to 2025
$939k
NCI NIH HHS P30 CA093373NCI NIH HHS P30CA093373NIAMS NIH HHS K24 AR077313NIGMS NIH HHS R01 GM049077NIH HHS K24AR077313NIH HHS R01GM049077
6 · The paper itself

Abstract

Secreted proteins are overexpressed in cholangiocarcinoma (CCA) and actively involved in promoting metastatic spread. Many of these proteins possess one or more sites of glycosylation and their various glycoforms have potential utility as prognostic or diagnostic biomarkers. To evaluate the effects of secretome glycosylation on patient outcome, we elucidated the glycosylation patterns of proteins secreted by parental and metastatic CCA cells using liquid chromatography-mass spectrometry. Our analysis showed that the secretome of CCA cells was dominated by fucosylated and fucosialylated glycoforms. Based on the glycan and protein profiles, we evaluated the combined prognostic significance of glycosyltransferases and secretory proteins. Significantly, genes encoding fucosyltransferases and sialyltransferases showed favorable prognostic effects when combined with secretory protein-coding gene expression, particularly thrombospondin-1. Combining these measures may provide improved risk assessment for CCA and be used to indicate stages of disease progression.

Indexed as

Bile Duct NeoplasmsCholangiocarcinomaGlycoproteinsCell Line, TumorDisease ProgressionGlycosylationHumansPolysaccharidesPrognosisGlycoproteinsPolysaccharidescholangiocarcinomaglycosylationmetastasissecreted proteinssurvival

Identifiers

PMID37921263
PMCPMC10939962
OpenAlexW4388302784

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.