Evidence map›Paper›PMID 37920871›Full record

ArticleMethodsX2023

Optimized method for differential gene expression analysis in non-model species: Case of

Aragón-Magadán Marco Aurelio, Calvillo-Aguilar Francisco Fabián, Cruz-Cárdenas Carlos Iván, Guzmán Luis Felipe

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in MethodsX, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.2field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 1 citations in OpenAlex.

  1. Article
  2. De Novo Transcriptome Assembly of Cedar (Current issues in molecular biology · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Aragón-Magadán Marco AurelioAgricultural and Livestock Researches, National Genetic Resources Center, National Institute of Forestry, Jalisco, Mexico.
Calvillo-Aguilar Francisco FabiánAgricultural and Livestock Researches, National Genetic Resources Center, National Institute of Forestry, Jalisco, Mexico.
Cruz-Cárdenas Carlos IvánAgricultural and Livestock Researches, National Genetic Resources Center, National Institute of Forestry, Jalisco, Mexico.
Guzmán Luis FelipeAgricultural and Livestock Researches, National Genetic Resources Center, National Institute of Forestry, Jalisco, Mexico.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The following protocol introduces a targeted methodological approach of differential gene expression analysis, which is particularly beneficial in the context of non-model species. While we acknowledge that biological complexity often involves the interplay of multiple genes in any given biological response our method provides a strategy to streamline this complexity, enabling researchers to focus on a more manageable subset of genes of interest. In this context, red cedar transcriptome (

Indexed as

A pipeline for gene specific differential expression analysis in non-model species: case Cedrela odorata LBioinformaticsLinuxRNAseqTranscriptomics

Identifiers

PMID37920871
PMCPMC10618499
OpenAlexW4387752297

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.