Evidence map›Paper›PMID 37920396›Full record

ArticleRSC chemical biology2023

A strategy for orthogonal deubiquitination using a bump-and-hole approach.

Takumi Suzuki, Yuki Utsugi, Satoshi Yamanaka, Hirotaka Takahashi, Yusuke Sato, Tatsuya Sawasaki, Yusaku Miyamae

Open access · goldAbstract read
In one paragraph

Article in RSC chemical biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact, top 71% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 0 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Takumi SuzukiMaster's/Doctoral Program in Life Science Innovation, Graduate School of Comprehensive Human Sciences, University of Tsukuba Tsukuba Ibaraki 305-8572 Japan.
Yuki UtsugiMaster's/Doctoral Program in Life Science Innovation, Graduate School of Comprehensive Human Sciences, University of Tsukuba Tsukuba Ibaraki 305-8572 Japan.
Satoshi YamanakaDivision of Cell-Free Science, Proteo-Science Center, Ehime University Matsuyama Ehime 790-8577 Japan.
Hirotaka TakahashiDivision of Cell-Free Science, Proteo-Science Center, Ehime University Matsuyama Ehime 790-8577 Japan.
Yusuke SatoCenter for Research on Green Sustainable Chemistry, Tottori University Tottori 680-8552 Japan.
Tatsuya SawasakiDivision of Cell-Free Science, Proteo-Science Center, Ehime University Matsuyama Ehime 790-8577 Japan.
Yusaku MiyamaeInstitute of Life and Environmental Sciences, University of Tsukuba Tsukuba Ibaraki 305-8572 Japan miyamae.yusaku.fw@u.tsukuba.ac.jp.ORCID https://orcid.org/0000-0002-8102-4391
Ehime University · JPUniversity of Tsukuba · JPTottori University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We have successfully applied a bump-and-hole approach to establish orthogonal deubiquitination in which a ubiquitin substrate variant is specifically targeted by an engineered deubiquitinating enzyme (DUB). This makes it possibe to selectively observe and measure a single type of DUB activity in living cells.

Identifiers

PMID37920396
PMCPMC10619139
OpenAlexW4387271963

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.