Evidence map›Paper›PMID 37918622›Full record

ArticleJournal of biomedical informatics2023

Shape Expressions (ShEx) schemas for the FHIR R5 specification.

Deepak K Sharma, Eric Prud'hommeaux, David Booth, Claude Nanjo, Guoqian Jiang

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Journal of biomedical informatics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Deepak K SharmaMayo Clinic, Rochester, MN, USA. Electronic address: sharma.deepak2@mayo.edu.
Eric Prud'hommeauxJaneiro Digital, Boston, MA, USA.
David BoothYosemite Project, Somerville, MA, USA.
Claude NanjoUniversity of Utah, UT, USA.
Guoqian JiangMayo Clinic, Rochester, MN, USA.

Funding

FHIRCat: Enabling the Semantics of FHIR and Terminologies for Clinical and Translational ResearchR01EB030529 · NIBIB · MAYO CLINIC ROCHESTER · PI FREIMUTH, ROBERT RICHARD · 2021 to 2024
$2.7M
NIBIB NIH HHS R01 EB030529
6 · The paper itself

Abstract

This work continues along a visionary path of using Semantic Web standards such as RDF and ShEx to make healthcare data easier to integrate for research and leading-edge patient care. The work extends the ability to use ShEx schemas to validate FHIR RDF data, thereby enhancing the semantic web ecosystem for working with FHIR and non-FHIR data using the same ShEx validation framework. It updates FHIR's ShEx schemas to fix outstanding issues and reflect changes in the definition of FHIR RDF. In addition, it experiments with expressing FHIRPath constraints (which are not captured in the XML or JSON schemas) in ShEx schemas. These extended ShEx schemas were incorporated into the FHIR R5 specification and used to successfully validate FHIR R5 examples that are included with the FHIR specification, revealing several errors in the examples.

Indexed as

EcosystemElectronic Health RecordsDelivery of Health CareHumansClinical knowledge graphsData standardsFast Healthcare Interoperability Resources (FHIR)RDF graphsSemantic webShape Expressions (ShEx)

Identifiers

PMID37918622
PMCPMC10841909

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.