Evidence map›Paper›PMID 37917585›Full record

ArticleCell reports2023

The ubiquitin conjugase Rad6 mediates ribosome pausing during oxidative stress.

Sezen Meydan, Géssica C Barros, Vanessa Simões, Lana Harley, Blanche K Cizubu, Nicholas R Guydosh, Gustavo M Silva

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Article
  3. Quantitative profiling of basal and stress-induced ribosome collisions.bioRxiv : the preprint server for biology · 2026
    Article
  4. Review
  5. Review
  6. Review
  7. Article
  8. Investigation into Antioxidant Mechanism ofFoods (Basel, Switzerland) · 2024
    Article
  9. Article
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Sezen MeydanNational Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD 20892, USA; Postdoctoral Research Associate Training Fellowship, National Institute of General Medical Sciences, National Institutes of Health, Bethesda, MD 20982, USA.
Géssica C BarrosDepartment of Biology, Duke University, Durham, NC 27708, USA.
Vanessa SimõesDepartment of Biology, Duke University, Durham, NC 27708, USA.
Lana HarleyDepartment of Biology, Duke University, Durham, NC 27708, USA.
Blanche K CizubuDepartment of Biology, Duke University, Durham, NC 27708, USA.
Nicholas R GuydoshNational Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD 20892, USA. Electronic address: nicholas.guydosh@nih.gov.
Gustavo M SilvaDepartment of Biology, Duke University, Durham, NC 27708, USA. Electronic address: gustavo.silva@duke.edu.
Duke University · USNational Institutes of Health · US

Funding

Molecular mechanism of the ribosome and functions of translational regulationZIADK075132 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI GUYDOSH, NICHOLAS · 2016 to 2025
$14.3M
Dissecting the roles of ubiquitin in translation controlR35GM137954 · NIGMS · DUKE UNIVERSITY · PI Gustavo M Silva · 2020 to 2026
$3.0M
Understanding genome-wide and single-molecule dynamics of colliding ribosomes during health and diseaseFI2GM137845 · NIGMS · U.S. NATIONAL INST DIABETES/DIGST/KIDNEY · PI MEYDAN MARKS, FATMA SEZEN · 2020 to 2020
–
Intramural NIH HHS ZIA DK075132NIGMS NIH HHS FI2 GM137845NIGMS NIH HHS R35 GM137954
6 · The paper itself

Abstract

Oxidative stress causes K63-linked ubiquitination of ribosomes by the E2 ubiquitin conjugase Rad6. How Rad6-mediated ubiquitination of ribosomes affects translation, however, is unclear. We therefore perform Ribo-seq and Disome-seq in Saccharomyces cerevisiae and show that oxidative stress causes ribosome pausing at specific amino acid motifs, which also leads to ribosome collisions. However, these redox-pausing signatures are lost in the absence of Rad6 and do not depend on the ribosome-associated quality control (RQC) pathway. We also show that Rad6 is needed to inhibit overall translation in response to oxidative stress and that its deletion leads to increased expression of antioxidant genes. Finally, we observe that the lack of Rad6 leads to changes during translation that affect activation of the integrated stress response (ISR) pathway. Our results provide a high-resolution picture of the gene expression changes during oxidative stress and unravel an additional stress response pathway affecting translation elongation.

Indexed as

Saccharomyces cerevisiae ProteinsUbiquitingamma-Glutamyl HydrolaseOxidative StressRibosomesSaccharomyces cerevisiaegamma-Glutamyl HydrolaseSaccharomyces cerevisiae ProteinsUbiquitinCP: Molecular biologyoxidative stressRad6ribosome pauseribosome ubiquitinationstress responsetranslation control

Identifiers

PMID37917585
PMCPMC10755677
OpenAlexW4388226449

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.