Evidence map›Paper›PMID 37917136›Full record

ArticleMicrobial genomics2023

Genomic epidemiology of

Jolynne Mokaya, Kate C Mellor, Gemma G R Murray, Akuzike Kalizang'oma, Cebile Lekhuleni, Heather J Zar, Mark P Nicol, Lesley McGee, Stephen D Bentley, Stephanie W Lo and 1 more

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Microbial genomics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed, 1 pooled it
0.9field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 1 synthesis or guideline pooled it, 4 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 6 countries.

Jolynne MokayaParasites and Microbes, Wellcome Sanger Institute, Hinxton, UK.
Kate C MellorParasites and Microbes, Wellcome Sanger Institute, Hinxton, UK.
Gemma G R MurrayParasites and Microbes, Wellcome Sanger Institute, Hinxton, UK.
Akuzike Kalizang'omaNIHR Mucosal Pathogens Research Unit, Research Department of Infection, Division of Infection and Immunity, University College London, London, UK.
Cebile LekhuleniCentre for Respiratory Diseases and Meningitis, National Institute for Communicable Diseases, a division of the National Health Laboratory Service, Johannesburg, South Africa.
Heather J ZarDepartment of Paediatrics and Child Health, Red Cross War Memorial Children's Hospital and SA-MRC unit on Child and Adolescent Health, University of Cape Town, Cape Town, South Africa.
Mark P NicolMarshall Centre, School of Biomedical Sciences, University of Western Australia, School of Biomedical Sciences, Perth, ACT, Australia.
Lesley McGeeCenters for Disease Control and Prevention, Atlanta, GA, USA.
Stephen D BentleyParasites and Microbes, Wellcome Sanger Institute, Hinxton, UK.
Stephanie W LoParasites and Microbes, Wellcome Sanger Institute, Hinxton, UK.
Felix DubeDepartment of Molecular and Cell Biology and Institute of Infectious Diseases and Molecular Medicine, University of Cape Town, Cape Town, South Africa.
Wellcome Sanger Institute · GBUniversity of Cape Town · ZACenters for Disease Control and Prevention · USNational Health Laboratory Service · ZAThe University of Western Australia · AUUniversity of Liverpool · GB

Funding

The nasopharyngeal microbiota of African children and lower respiratory tract infectionU54HG009824 · NHGRI · UNIVERSITY OF CAPE TOWN · PI NICOL, MARK PATRICK · 2017 to 2021
$2.9M
Southern African-Pittsburgh Public Health Genomic Epidemiology Training Program (SAPPHGenE)D43TW011255 · FIC · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Lee H Harrison, Anne von Gottberg · 2019 to 2026
$1.7M
FIC NIH HHS D43 TW011255NHGRI NIH HHS U01 HG006961NHGRI NIH HHS U54 HG009824Wellcome Trust
6 · The paper itself

Abstract

Due to the emergence of non-vaccine serotypes in vaccinated populations,

Indexed as

Streptococcus pneumoniaeTrimethoprim, Sulfamethoxazole Drug CombinationAnti-Bacterial AgentsGenomicsHumansInfantPenicillinsPneumococcal VaccinesSerogroupSouth AfricaAnti-Bacterial AgentsPenicillinsPneumococcal VaccinesTrimethoprim, Sulfamethoxazole Drug Combinationantimicrobial resistancelineagespneumococciserotypevirulence

Identifiers

PMID37917136
PMCPMC10711320
OpenAlexW4388219241

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.