Evidence map›Paper›PMID 37915953›Full record

ArticleWellcome open research2023

MendelianRandomization v0.9.0: updates to an R package for performing Mendelian randomization analyses using summarized data.

Ashish Patel, Ting Ye, Haoran Xue, Zhaotong Lin, Siqi Xu, Benjamin Woolf, Amy M Mason, Stephen Burgess

Abstract read
In one paragraph

Article in Wellcome open research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed, 3 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 3 syntheses or guidelines pooled it.

  1. Pooled it
  2. rs762855 single nucleotide polymorphism modulates the risk for diffuse-type gastric cancer in females: a genome-wide association study in the Korean population.Gastric cancer : official journal of the International Gastric Cancer Association and the Japanese Gastric Cancer Association · 2025
    Pooled it
  3. Pooled it
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  18. Multi-omics Data Integration.Advances in experimental medicine and biology · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Ashish PatelMRC Biostatistics Unit, University of Cambridge, Cambridge, England, CB2 0SR, UK.
Ting YeDepartment of Biostatistics, University of Washington, Seattle, Washington, USA.
Haoran XueDepartment of Biostatistics, City University of Hong Kong, Hong Kong, Hong Kong.
Zhaotong LinDivision of Biostatistics, School of Public Health, University of Minnesota Duluth, Duluth, Minnesota, USA.ORCID https://orcid.org/0000-0001-8723-4392
Siqi XuDepartment of Statistics and Actuarial Science, The University of Hong Kong, Hong Kong, Hong Kong.
Benjamin WoolfMRC Biostatistics Unit, University of Cambridge, Cambridge, England, CB2 0SR, UK.
Amy M MasonBritish Heart Foundation Cardiovascular Epidemiology Unit, Department of Public Health and Primary Care, University of Cambridge, Cambridge, England, UK.ORCID https://orcid.org/0000-0002-8019-0777
Stephen BurgessMRC Biostatistics Unit, University of Cambridge, Cambridge, England, CB2 0SR, UK.ORCID https://orcid.org/0000-0001-5365-8760

Funding

Medical Research Council MC_UU_00002/7Wellcome Trust 100114Wellcome Trust 204623/Z/16/Z
6 · The paper itself

Abstract

The MendelianRandomization package is a software package written for the R software environment that implements methods for Mendelian randomization based on summarized data. In this manuscript, we describe functions that have been added or edited in the package since version 0.5.0, when we last described the package and its contents. The main additions to the package since that time are: 1) new robust methods for performing Mendelian randomization, particularly in the cases of bias from weak instruments and/or winner's curse, and pleiotropic variants, 2) methods for performing Mendelian randomization with correlated variants using dimension reduction to summarize large numbers of highly correlated variants into a limited set of principal components, 3) functions for calculating first-stage F statistics, representing instrument strength, in both univariable and multivariable contexts, and with uncorrelated and correlated genetic variants. We also discuss some pragmatic issues relating to the use of correlated variants in Mendelian randomization.

Indexed as

causal inferencegenetic associationsgenetic epidemiologyinstrumental variableMendelian randomizationpost-GWAS analysissummarized data

Identifiers

PMID37915953
PMCPMC10616660

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.