Evidence map›Paper›PMID 37915079›Full record

ArticleBMC infectious diseases2023

Community transmission of SARS-CoV-2 during the Delta wave in New York City.

Katherine Dai, Steffen Foerster, Neil M Vora, Kathleen Blaney, Chris Keeley, Lisa Hendricks, Jay K Varma, Theodore Long, Jeffrey Shaman, Sen Pei

Abstract read
In one paragraph

Article in BMC infectious diseases, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Reconstructing the early spatial spread of pandemic respiratory viruses in the United States.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  2. Article
  3. Observational
  4. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Katherine DaiDepartment of Environmental Health Sciences, Mailman School of Public Health, Columbia University, 722 West 168th St, New York, NY, 10032, USA.
Steffen FoersterNew York City Department of Health and Mental Hygiene (DOHMH), Long Island City, NY, 11001, USA.
Neil M VoraNew York City Department of Health and Mental Hygiene (DOHMH), Long Island City, NY, 11001, USA.
Kathleen BlaneyNew York City Department of Health and Mental Hygiene (DOHMH), Long Island City, NY, 11001, USA.
Chris KeeleyNew York City Department of Health and Mental Hygiene (DOHMH), Long Island City, NY, 11001, USA.
Lisa HendricksNew York City Department of Health and Mental Hygiene (DOHMH), Long Island City, NY, 11001, USA.
Jay K VarmaDepartment of Population Health Sciences, Weill Cornell Medical College, New York, NY, 10065, USA.
Theodore LongNYC Health + Hospitals, New York, NY, USA.
Jeffrey ShamanDepartment of Environmental Health Sciences, Mailman School of Public Health, Columbia University, 722 West 168th St, New York, NY, 10032, USA.
Sen PeiDepartment of Environmental Health Sciences, Mailman School of Public Health, Columbia University, 722 West 168th St, New York, NY, 10032, USA. sp3449@cumc.columbia.edu.

Funding

Quantifying Error Growth to Improve Infectious Disease Forecast AccuracyR01AI163023 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI JEFFREY L SHAMAN · 2021 to 2026
$3.3M
ACL HHS U01CK000592CDC HHS U01CK000592NCEZID CDC HHS U01 CK000592NIAID NIH HHS R01 AI163023NIH HHS R01AI163023
6 · The paper itself

Abstract

backgroundUnderstanding community transmission of SARS-CoV-2 variants of concern (VOCs) is critical for disease control in the post pandemic era. The Delta variant (B.1.617.2) emerged in late 2020 and became the dominant VOC globally in the summer of 2021. While the epidemiological features of the Delta variant have been extensively studied, how those characteristics shaped community transmission in urban settings remains poorly understood.

methodsUsing high-resolution contact tracing data and testing records, we analyze the transmission of SARS-CoV-2 during the Delta wave within New York City (NYC) from May 2021 to October 2021. We reconstruct transmission networks at the individual level and across 177 ZIP code areas, examine network structure and spatial spread patterns, and use statistical analysis to estimate the effects of factors associated with COVID-19 spread.

resultsWe find considerable individual variations in reported contacts and secondary infections, consistent with the pre-Delta period. Compared with earlier waves, Delta-period has more frequent long-range transmission events across ZIP codes. Using socioeconomic, mobility and COVID-19 surveillance data at the ZIP code level, we find that a larger number of cumulative cases in a ZIP code area is associated with reduced within- and cross-ZIP code transmission and the number of visitors to each ZIP code is positively associated with the number of non-household infections identified through contact tracing and testing.

conclusionsThe Delta variant produced greater long-range spatial transmission across NYC ZIP code areas, likely caused by its increased transmissibility and elevated human mobility during the study period. Our findings highlight the potential role of population immunity in reducing transmission of VOCs. Quantifying variability of immunity is critical for identifying subpopulations susceptible to future VOCs. In addition, non-pharmaceutical interventions limiting human mobility likely reduced SARS-CoV-2 spread over successive pandemic waves and should be encouraged for reducing transmission of future VOCs.

Indexed as

CoinfectionCOVID-19HumansNew York CitySARS-CoV-2Community transmissionContact tracingDelta variantSARS-CoV-2Transmission networks

Identifiers

PMID37915079
PMCPMC10621074

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.