Evidence map›Paper›PMID 37914857›Full record

ArticleNature methods2023

Chromoscope: interactive multiscale visualization for structural variation in human genomes.

Sehi L'Yi, Dominika Maziec, Victoria Stevens, Trevor Manz, Alexander Veit, Michele Berselli, Peter J Park, Dominik Głodzik, Nils Gehlenborg

Abstract readLetter
PubMed Full text at PMC Publisher
In one paragraph

Article in Nature methods, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Geranium: Multimodal Retrieval of Genomics Data Visualizations.IEEE transactions on visualization and computer graphics · 2026
    Article
  2. Design Space and Declarative Grammar for 3D Genomic Data Visualization.IEEE transactions on visualization and computer graphics · 2026
    Article
  3. Article
  4. Review
  5. Article
  6. Learnable and Expressive Visualization Authoring Through Blended Interfaces.IEEE transactions on visualization and computer graphics · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Sehi L'YiDepartment of Biomedical Informatics, Harvard Medical School, Boston, MA, USA.ORCID http://orcid.org/0000-0001-7720-2848
Dominika MaziecDepartment of Biomedical Informatics, Harvard Medical School, Boston, MA, USA.ORCID http://orcid.org/0009-0009-4427-7267
Victoria StevensDepartment of Biomedical Informatics, Harvard Medical School, Boston, MA, USA.ORCID http://orcid.org/0000-0003-4208-6001
Trevor ManzDepartment of Biomedical Informatics, Harvard Medical School, Boston, MA, USA.
Alexander VeitDepartment of Biomedical Informatics, Harvard Medical School, Boston, MA, USA.
Michele BerselliDepartment of Biomedical Informatics, Harvard Medical School, Boston, MA, USA.ORCID http://orcid.org/0000-0001-8577-9137
Peter J ParkDepartment of Biomedical Informatics, Harvard Medical School, Boston, MA, USA. peter_park@hms.harvard.edu.ORCID http://orcid.org/0000-0001-9378-960X
Dominik GłodzikDepartment of Biomedical Informatics, Harvard Medical School, Boston, MA, USA. dominik_glodzik@hms.harvard.edu.ORCID http://orcid.org/0000-0001-8112-9073
Nils GehlenborgDepartment of Biomedical Informatics, Harvard Medical School, Boston, MA, USA. nils@hms.harvard.edu.ORCID http://orcid.org/0000-0003-0327-8297

Funding

4D Nucleome Network Data Coordination and Integration CenterU01CA200059 · NCI · HARVARD MEDICAL SCHOOL · PI PARK, PETER J · 2015 to 2024
$24.4M
Grammar-Driven Genomic Data VisualizationR01HG011773 · NHGRI · HARVARD MEDICAL SCHOOL · PI GEHLENBORG, NILS · 2022 to 2025
$2.3M
NCI NIH HHS U01 CA200059NHGRI NIH HHS R01 HG011773
6 · The paper itself

Abstract

PubMed holds no abstract for this paper.

Identifiers

PMID37914857
PMCPMC10883074

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.