Evidence map›Paper›PMID 37914743›Full record

ArticleScientific reports2023

Using picoliter droplet deposition to track clonal competition in adherent and organoid cancer cell cultures.

Selami Baglamis, Vivek M Sheraton, Debora Meijer, Haibin Qian, Ron A Hoebe, Kristiaan J Lenos, Max A Betjes, Max A Betjes, Sander Tans, Jeroen van Zon and 2 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.4field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 2 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Selami BaglamisLaboratory for Experimental Oncology and Radiobiology, Center for Experimental and Molecular Medicine, Amsterdam UMC Location University of Amsterdam, Meibergdreef 9, 1105 AZ, Amsterdam, The Netherlands.
Vivek M Sheraton *Laboratory for Experimental Oncology and Radiobiology, Center for Experimental and Molecular Medicine, Amsterdam UMC Location University of Amsterdam, Meibergdreef 9, 1105 AZ, Amsterdam, The Netherlands.
Debora Meijer *Cancer Center Amsterdam, 1081 HV, Amsterdam, The Netherlands.
Haibin QianCancer Center Amsterdam, 1081 HV, Amsterdam, The Netherlands.
Ron A HoebeCancer Center Amsterdam, 1081 HV, Amsterdam, The Netherlands.
Kristiaan J LenosLaboratory for Experimental Oncology and Radiobiology, Center for Experimental and Molecular Medicine, Amsterdam UMC Location University of Amsterdam, Meibergdreef 9, 1105 AZ, Amsterdam, The Netherlands.
Max A BetjesLaboratory for Experimental Oncology and Radiobiology, Center for Experimental and Molecular Medicine, Amsterdam UMC Location University of Amsterdam, Meibergdreef 9, 1105 AZ, Amsterdam, The Netherlands.
Max A BetjesAMOLF, 1098 XG, Amsterdam, The Netherlands.
Sander TansAMOLF, 1098 XG, Amsterdam, The Netherlands.
Jeroen van ZonAMOLF, 1098 XG, Amsterdam, The Netherlands.
Louis VermeulenLaboratory for Experimental Oncology and Radiobiology, Center for Experimental and Molecular Medicine, Amsterdam UMC Location University of Amsterdam, Meibergdreef 9, 1105 AZ, Amsterdam, The Netherlands. l.vermeulen@amsterdamumc.nl.ORCID 0000-0002-6066-789X
Przemek M KrawczykCancer Center Amsterdam, 1081 HV, Amsterdam, The Netherlands. p.krawczyk@amsterdamumc.nl.ORCID 0000-0002-2932-7782
Institute for Atomic and Molecular Physics · NLAmsterdam University Medical Centers · NLOncode Institute · NLDutch Cancer Society · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Clonal growth and competition underlie processes of key relevance in etiology, progression and therapy response across all cancers. Here, we demonstrate a novel experimental approach, based on multi-color, fluorescent tagging of cell nuclei, in combination with picoliter droplet deposition, to study the clonal dynamics in two- and three-dimensional cell cultures. The method allows for the simultaneous visualization and analysis of multiple clones in individual multi-clonal colonies, providing a powerful tool for studying clonal dynamics and identifying clonal populations with distinct characteristics. Results of our experiments validate the utility of the method in studying clonal dynamics in vitro, and reveal differences in key aspects of clonal behavior of different cancer cell lines in monoculture conditions, as well as in co-cultures with stromal fibroblasts.

Indexed as

Cell Culture TechniquesNeoplasmsCell LineClone CellsCoculture TechniquesHumans

Identifiers

PMID37914743
PMCPMC10620187
OpenAlexW4388141975

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.