Evidence map›Paper›PMID 37908848›Full record

ArticleFrontiers in medicine2023

Latent diffusion augmentation enhances deep learning analysis of neuro-morphology in limbal stem cell deficiency.

David Gibson, Thai Tran, Vidhur Raveendran, Clémence Bonnet, Nathan Siu, Micah Vinet, Theo Stoddard-Bennett, Corey Arnold, Sophie X Deng, William Speier

Open access · goldAbstract read
In one paragraph

Article in Frontiers in medicine, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.2field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

David GibsonMedical Informatics Home Area, Graduate Programs in Bioscience, University of California, Los Angeles, Los Angeles, CA, United States.
Thai TranMedical Informatics Home Area, Graduate Programs in Bioscience, University of California, Los Angeles, Los Angeles, CA, United States.
Vidhur RaveendranDepartment of Bioengineering, University of California, Los Angeles, Los Angeles, CA, United States.
Clémence BonnetOphthalmology Department, Cochin Hospital and Paris Cité University, AP-HP, Paris, France.
Nathan SiuMedical Informatics Home Area, Graduate Programs in Bioscience, University of California, Los Angeles, Los Angeles, CA, United States.
Micah VinetDepartment of Bioengineering, University of California, Los Angeles, Los Angeles, CA, United States.
Theo Stoddard-BennettDavid Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, United States.
Corey ArnoldMedical Informatics Home Area, Graduate Programs in Bioscience, University of California, Los Angeles, Los Angeles, CA, United States.
Sophie X DengStein Eye Institute, University of California, Los Angeles, Los Angeles, CA, United States.
William SpeierMedical Informatics Home Area, Graduate Programs in Bioscience, University of California, Los Angeles, Los Angeles, CA, United States.
University of California, Los Angeles · USComputational Diagnostics (United States) · USAssistance Publique – Hôpitaux de Paris · FR

Funding

Ex Vivo Expansion of Human Limbal Stem Cells for TransplantationR01EY021797 · NEI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Sophie Deng · 2012 to 2026
$5.1M
Development of small-molecule Wnt mimetics for corneal epithelial cell regenerationR01EY028557 · NEI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI DENG, SOPHIE, ZHENG, JIE J. · 2018 to 2021
$2.0M
NEI NIH HHS R01 EY021797NEI NIH HHS R01 EY028557
6 · The paper itself

Abstract

Introduction: Limbal Stem Cell Deficiency (LSCD) is a blinding corneal disease characterized by the loss of function or deficiency in adult stem cells located at the junction between the cornea and the sclera (i.e., the limbus), namely the limbal stem cells (LSCs). Recent advances in Methods: The current study employs a novel deep learning approach to classify neuron morphology in various LSCD stages and healthy controls, by integrating images created through latent diffusion augmentation. The proposed model, a residual U-Net, is based in part on the InceptionResNetV2 transfer learning model. Results: Deep learning was able to determine fiber number, branching, and fiber length with high accuracy (R2 of 0.63, 0.63, and 0.80, respectively). The model trained on images generated through latent diffusion on average outperformed the same model when trained on solely original images. The model was also able to detect LSCD with an AUC of 0.867, which showed slightly higher performance compared to classification using manually assessed metrics. Discussion: The results suggest that utilizing latent diffusion to supplement training data may be effective in bolstering model performance. The results of the model emphasize the ability as well as the shortcomings of this novel deep learning approach to predict various nerve morphology metrics as well as LSCD disease severity.

Indexed as

deep learningin vivo confocal microscopylimbal stem cell deficiencymachine learningophthalmology

Identifiers

PMID37908848
PMCPMC10613638
OpenAlexW4387671253

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.