Evidence map›Paper›PMID 37907473›Full record

ArticleNature communications2023

Synthesis of tertiary alkylphosphonate oligonucleotides through light-driven radical-polar crossover reactions.

Kenji Ota, Kazunori Nagao, Dai Hata, Haruki Sugiyama, Yasutomo Segawa, Ryosuke Tokunoh, Tomohiro Seki, Naoya Miyamoto, Yusuke Sasaki, Hirohisa Ohmiya

Abstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Iron-Photocatalyzed C(spAngewandte Chemie (International ed. in English) · 2026
    Article
  2. Article
  3. Article
  4. Chemical strategies for antisense antibiotics.Chemical Society reviews · 2024
    Review
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Kenji OtaInstitute for Chemical Research, Kyoto University, Uji, Kyoto, Japan.
Kazunori NagaoInstitute for Chemical Research, Kyoto University, Uji, Kyoto, Japan. nagao.kazunori.4j@kyoto-u.ac.jp.
Dai HataResearch, Takeda Pharmaceutical Company Limited, Fujisawa, Kanagawa, Japan. dai.hata@takeda.com.ORCID http://orcid.org/0009-0000-7934-046X
Haruki SugiyamaInstitute for Molecular Science Myodaiji, Okazaki, Japan.
Yasutomo SegawaInstitute for Molecular Science Myodaiji, Okazaki, Japan.ORCID http://orcid.org/0000-0001-6439-8546
Ryosuke TokunohResearch, Takeda Pharmaceutical Company Limited, Fujisawa, Kanagawa, Japan.
Tomohiro SekiResearch, Takeda Pharmaceutical Company Limited, Fujisawa, Kanagawa, Japan.
Naoya MiyamotoResearch, Takeda Pharmaceutical Company Limited, Fujisawa, Kanagawa, Japan.
Yusuke SasakiResearch, Takeda Pharmaceutical Company Limited, Fujisawa, Kanagawa, Japan.
Hirohisa OhmiyaInstitute for Chemical Research, Kyoto University, Uji, Kyoto, Japan. ohmiya@scl.kyoto-u.ac.jp.ORCID http://orcid.org/0000-0002-1374-1137

Funding

MEXT | Japan Society for the Promotion of Science (JSPS) JP21H04681MEXT | Japan Society for the Promotion of Science (JSPS) JP22KJ1938MEXT | Japan Society for the Promotion of Science (JSPS) JP23H04912MEXT | JST | Precursory Research for Embryonic Science and Technology (PRESTO) JPMJPR19T2
6 · The paper itself

Abstract

Chemical modification of nucleotides can improve the metabolic stability and target specificity of oligonucleotide therapeutics, and alkylphosphonates have been employed as charge-neutral replacements for naturally-occurring phosphodiester backbones in these compounds. However, at present, the alkyl moieties that can be attached to phosphorus atoms in these compounds are limited to methyl groups or primary/secondary alkyls, and such alkylphosphonate moieties can degrade during oligonucleotide synthesis. The present work demonstrates the tertiary alkylation of the phosphorus atoms of phosphites bearing two 2'-deoxynuclosides. This process utilizes a carbocation generated via a light-driven radical-polar crossover mechanism. This protocol provides tertiary alkylphosphonate structures that are difficult to synthesize using existing methods. The conversion of these species to oligonucleotides having charge-neutral alkylphosphonate linkages through a phosphoramidite-based approach was also confirmed in this study.

Identifiers

PMID37907473
PMCPMC10618202

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.