Evidence map›Paper›PMID 37907464›Full record

ArticleNature communications2023

The structure of a hibernating ribosome in a Lyme disease pathogen.

Manjuli R Sharma, Swati R Manjari, Ekansh K Agrawal, Pooja Keshavan, Ravi K Koripella, Soneya Majumdar, Ashley L Marcinkiewicz, Yi-Pin Lin, Rajendra K Agrawal, Nilesh K Banavali

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. HflX-mediated drug resistance through ribosome splitting and rRNA disordering in mycobacteria.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  3. Article
  4. Article
  5. Article
  6. Extraribosomal Functions of Bacterial Ribosomal Proteins-An Update, 2023.International journal of molecular sciences · 2024
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Manjuli R SharmaDivision of Translational Medicine, Wadsworth Center, New York State Department of Health, Albany, NY, USA.ORCID 0000-0003-4821-748X
Swati R ManjariDivision of Translational Medicine, Wadsworth Center, New York State Department of Health, Albany, NY, USA.ORCID 0000-0002-3164-2300
Ekansh K AgrawalDivision of Translational Medicine, Wadsworth Center, New York State Department of Health, Albany, NY, USA.
Pooja KeshavanDivision of Translational Medicine, Wadsworth Center, New York State Department of Health, Albany, NY, USA.
Ravi K KoripellaDivision of Translational Medicine, Wadsworth Center, New York State Department of Health, Albany, NY, USA.ORCID 0000-0003-2901-1507
Soneya MajumdarDivision of Translational Medicine, Wadsworth Center, New York State Department of Health, Albany, NY, USA.
Ashley L MarcinkiewiczDivision of Infectious Diseases, Wadsworth Center, New York State Department of Health, Albany, NY, USA.
Yi-Pin LinDivision of Infectious Diseases, Wadsworth Center, New York State Department of Health, Albany, NY, USA.ORCID 0000-0002-5240-2031
Rajendra K AgrawalDivision of Translational Medicine, Wadsworth Center, New York State Department of Health, Albany, NY, USA. rajendra.agrawal@health.ny.gov.ORCID 0000-0001-9392-0065
Nilesh K BanavaliDivision of Translational Medicine, Wadsworth Center, New York State Department of Health, Albany, NY, USA. nilesh.banavali@health.ny.gov.ORCID 0000-0003-2206-7049
New York State Department of Health · US

Funding

TRD #3: An automated and streamlined pipeline for in-situ molecular microscopyP41GM103310 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI DE MARCO, ALEX, KIEFT, JEFFREY S · 2012 to 2021
$14.7M
Structural Aspects of Protein Synthesis in the Mammalian MitochondriaR01GM061576 · NIGMS · WADSWORTH CENTER · PI AGRAWAL, RAJENDRA K · 2001 to 2018
$6.4M
Alternative Ribosomes & Antibiotic Tolerance in MycobacteriaR01AI132422 · NIAID · WADSWORTH CENTER · PI RAJENDRA K AGRAWAL, Anil Kumar Ojha · 2017 to 2026
$3.8M
Role of ribosome modulating proteins in conferring Mycobacterium abscessus antibiotic resistanceR01AI155473 · NIAID · WADSWORTH CENTER · PI GHOSH, PALLAVI · 2020 to 2024
$2.4M
Systematic Discovery and Analysis of Small Proteins and Small ORFs in MycobacteriaR01GM139277 · NIGMS · WADSWORTH CENTER · PI DERBYSHIRE, KEITH M, GRAY, TODD · 2020 to 2023
$2.2M
6500 QTrap Mass Spectrometer for Yale UniversityS10OD018034 · OD · YALE UNIVERSITY · PI MANE, SHRIKANT M · 2014 to 2014
$514k
An Ultra-Performance Liquid Chromatography System to Support Metabolomics at Yale UniversityS10OD019967 · OD · YALE UNIVERSITY · PI LAM, TUKIET T · 2015 to 2015
$135k
NIAID NIH HHS R01 AI132422NIAID NIH HHS R01 AI155473NIGMS NIH HHS P41 GM103310NIGMS NIH HHS R01 GM061576NIGMS NIH HHS R01 GM139277NIH HHS S10 OD018034NIH HHS S10 OD019967
6 · The paper itself

Abstract

The spirochete bacterial pathogen Borrelia (Borreliella) burgdorferi (Bbu) affects more than 10% of the world population and causes Lyme disease in about half a million people in the US annually. Therapy for Lyme disease includes antibiotics that target the Bbu ribosome. Here we present the structure of the Bbu 70S ribosome obtained by single particle cryo-electron microscopy at 2.9 Å resolution, revealing a bound hibernation promotion factor protein and two genetically non-annotated ribosomal proteins bS22 and bL38. The ribosomal protein uL30 in Bbu has an N-terminal α-helical extension, partly resembling the mycobacterial bL37 protein, suggesting evolution of bL37 and a shorter uL30 from a longer uL30 protein. Its analogy to proteins uL30m and mL63 in mammalian mitochondrial ribosomes also suggests a plausible evolutionary pathway for expansion of protein content in mammalian mitochondrial ribosomes. Computational binding free energy predictions for antibiotics reflect subtle distinctions in antibiotic-binding sites in the Bbu ribosome. Discovery of these features in the Bbu ribosome may enable better ribosome-targeted antibiotic design for Lyme disease treatment.

Indexed as

Bacterial ProteinsLyme DiseaseAnimalsAnti-Bacterial AgentsCryoelectron MicroscopyHumansMammalsRibosomal ProteinsRibosomesAnti-Bacterial AgentsBacterial ProteinsRibosomal Proteins

Identifiers

PMID37907464
PMCPMC10618245
OpenAlexW4388040938

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.