Evidence map›Paper›PMID 37905840›Full record

ArticleJournal of virology2023

Identification of host dependency factors involved in SARS-CoV-2 replication organelle formation through proteomics and ultrastructural analysis.

Felix Pahmeier, Teresa-Maria Lavacca, Sarah Goellner, Christopher J Neufeldt, Vibhu Prasad, Berati Cerikan, Sreejith Rajasekharan, Giulia Mizzon, Uta Haselmann, Charlotta Funaya and 3 more

Open access · hybridAbstract read
In one paragraph

Article in Journal of virology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 22 citations in OpenAlex.

  1. Review
  2. Dengue Virus NS1 Binds Ephrin B1 to Trigger Endothelial Dysfunction.bioRxiv : the preprint server for biology · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 1 country.

Felix Pahmeier *Department of Infectious Diseases, Molecular Virology, Heidelberg University, Medical Faculty Heidelberg, Center for Integrative Infectious Disease Research , Heidelberg, Germany.ORCID 0000-0002-7445-2259
Teresa-Maria Lavacca *Department of Infectious Diseases, Molecular Virology, Heidelberg University, Medical Faculty Heidelberg, Center for Integrative Infectious Disease Research , Heidelberg, Germany.ORCID 0000-0002-0851-524X
Sarah GoellnerDepartment of Infectious Diseases, Molecular Virology, Heidelberg University, Medical Faculty Heidelberg, Center for Integrative Infectious Disease Research , Heidelberg, Germany.
Christopher J NeufeldtDepartment of Infectious Diseases, Molecular Virology, Heidelberg University, Medical Faculty Heidelberg, Center for Integrative Infectious Disease Research , Heidelberg, Germany.
Vibhu PrasadDepartment of Infectious Diseases, Molecular Virology, Heidelberg University, Medical Faculty Heidelberg, Center for Integrative Infectious Disease Research , Heidelberg, Germany.
Berati CerikanDepartment of Infectious Diseases, Molecular Virology, Heidelberg University, Medical Faculty Heidelberg, Center for Integrative Infectious Disease Research , Heidelberg, Germany.
Sreejith RajasekharanSystems Arbovirology, Leibniz Institute of Virology , Hamburg, Germany.
Giulia MizzonDepartment of Infectious Diseases, Molecular Virology, Heidelberg University, Medical Faculty Heidelberg, Center for Integrative Infectious Disease Research , Heidelberg, Germany.
Uta HaselmannDepartment of Infectious Diseases, Molecular Virology, Heidelberg University, Medical Faculty Heidelberg, Center for Integrative Infectious Disease Research , Heidelberg, Germany.
Charlotta FunayaElectron Microscopy Core Facility, Heidelberg University , Heidelberg, Germany.
Pietro ScaturroSystems Arbovirology, Leibniz Institute of Virology , Hamburg, Germany.
Mirko CorteseDepartment of Infectious Diseases, Molecular Virology, Heidelberg University, Medical Faculty Heidelberg, Center for Integrative Infectious Disease Research , Heidelberg, Germany.ORCID 0000-0003-1786-4211
Ralf BartenschlagerDepartment of Infectious Diseases, Molecular Virology, Heidelberg University, Medical Faculty Heidelberg, Center for Integrative Infectious Disease Research , Heidelberg, Germany.ORCID 0000-0001-5601-9307
Heidelberg University · DELeibniz Institute of Virology (LIV) · DEGerman Cancer Research Center · DE

Funding

Bundesministerium für Bildung und Forschung (BMBF) VirMScanDeutsche Forschungsgemeinschaft (DFG) 240245660-SFB1129, 272983813-TRR 179Deutsche Forschungsgemeinschaft (DFG) SC 314/1-1European Molecular Biology Organization (EMBO) ALTF 454-2020Free and Hanseatic City of HamburgHelmholtz-Fonds (Helmholtz-Fonds e.V.) KA1-Co-02 'COVIPA'
6 · The paper itself

Abstract

importanceRemodeling of the cellular endomembrane system by viruses allows for efficient and coordinated replication of the viral genome in distinct subcellular compartments termed replication organelles. As a critical step in the viral life cycle, replication organelle formation is an attractive target for therapeutic intervention, but factors central to this process are only partially understood. In this study, we corroborate that two viral proteins, nsp3 and nsp4, are the major drivers of membrane remodeling in SARS-CoV-2 infection. We further report a number of host cell factors interacting with these viral proteins and supporting the viral replication cycle, some of them by contributing to the formation of the SARS-CoV-2 replication organelle.

Indexed as

COVID-19SARS-CoV-2Viral Nonstructural ProteinsVirus ReplicationHumansOrganellesProteomicsViral Nonstructural Proteinscoronavirusdouble-membrane vesiclehost-pathogen interactions

Identifiers

PMID37905840
PMCPMC10688318
OpenAlexW4388034046

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.