Evidence map›Paper›PMID 37905838›Full record

ArticleJournal of virology2023

Complete genome reconstruction of the global and European regional dispersal history of the lumpy skin disease virus.

Steven Van Borm, Simon Dellicour, Darren P Martin, Philippe Lemey, Eirini I Agianniotaki, Eleni D Chondrokouki, Dejan Vidanovic, Nikola Vaskovic, Tamaš Petroviċ, Sava Laziċ and 8 more

Open access · hybridAbstract read
In one paragraph

Article in Journal of virology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 8 institutions in 6 countries.

Steven Van Borm *Scientific Directorate Animal Infectious Diseases, Sciensano , Brussels, Belgium.ORCID 0000-0002-3464-2306
Simon Dellicour *Spatial Epidemiology Lab (SpELL), Université Libre de Bruxelles , Brussels, Belgium.ORCID 0000-0001-9558-1052
Darren P MartinInstitute of Infectious Diseases and Molecular Medicine, University of Cape Town , Cape Town, South Africa.
Philippe LemeyLaboratory for Clinical and Epidemiological Virology, Department of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven , Leuven, Belgium.
Eirini I AgianniotakiNational Reference Laboratory for Capripoxviruses, Department of Molecular Diagnostics, FMD, Virological, Rickettsial and Exotic Diseases, Directorate of Athens Veterinary Center, Ministry of Rural Development and Food , Athens, Greece.
Eleni D ChondrokoukiNational Reference Laboratory for Capripoxviruses, Department of Molecular Diagnostics, FMD, Virological, Rickettsial and Exotic Diseases, Directorate of Athens Veterinary Center, Ministry of Rural Development and Food , Athens, Greece.
Dejan VidanovicDepartment for laboratory diagnostics, Veterinary Specialized Institute , Kraljevo, Serbia.
Nikola VaskovicDepartment for laboratory diagnostics, Veterinary Specialized Institute , Kraljevo, Serbia.
Tamaš PetroviċDepartment for Virology, Scientific Veterinary Institute , Novi Sad, Serbia.
Sava LaziċDepartment for Virology, Scientific Veterinary Institute , Novi Sad, Serbia.
Xhelil KoleciFaculty of Veterinary Medicine, The Agricultural University of Tirana , Tirana, Albania.
Ani VodicaAnimal Health Department, Food Safety and Veterinary Institute , Tirana, Albania.
Igor DjadjovskiFaculty of Veterinary Medicine, Ss. Cyril and Methodius University in Skopje , Skopje, Macedonia.
Kiril KrstevskiFaculty of Veterinary Medicine, Ss. Cyril and Methodius University in Skopje , Skopje, Macedonia.
Frank VandenbusscheScientific Directorate Animal Infectious Diseases, Sciensano , Brussels, Belgium.ORCID 0000-0002-3214-6763
Andy HaegemanScientific Directorate Animal Infectious Diseases, Sciensano , Brussels, Belgium.
Kris De ClercqScientific Directorate Animal Infectious Diseases, Sciensano , Brussels, Belgium.
Elisabeth MathijsScientific Directorate Animal Infectious Diseases, Sciensano , Brussels, Belgium.ORCID 0000-0001-6004-605X
Sciensano (Belgium) · BEHellenic Ministry of Rural Development and Food · GRScientific Veterinary Institute "Novi Sad" · RSSs. Cyril and Methodius University in Skopje · MKAgricultural University of Tirana · ALRega Institute for Medical Research · BEUniversité Libre de Bruxelles · BEUniversity of Cape Town · ZA

Funding

European Commission (EC) 725422European Commission (EC) 773701European Commission (EC) 874850Fonds De La Recherche Scientifique - FNRS (FNRS) 4515.22Fonds Wetenschappelijk Onderzoek (FWO) G098321N
6 · The paper itself

Abstract

importanceLumpy skin disease virus (LSDV) has a complex epidemiology involving multiple strains, recombination, and vaccination. Its DNA genome provides limited genetic variation to trace outbreaks in space and time. Sequencing of LSDV whole genomes has also been patchy at global and regional scales. Here, we provide the first fine-grained whole genome sequence sampling of a constrained LSDV outbreak (southeastern Europe, 2015-2017), which we analyze along with global publicly available genomes. We formally evaluate the past occurrence of recombination events as well as the temporal signal that is required for calibrating molecular clock models and subsequently conduct a time-calibrated spatially explicit phylogeographic reconstruction. Our study further illustrates the importance of accounting for recombination events before reconstructing global and regional dynamics of DNA viruses. More LSDV whole genomes from endemic areas are needed to obtain a comprehensive understanding of global LSDV dispersal dynamics.

Indexed as

Genome, ViralLumpy Skin DiseaseLumpy skin disease virusAnimalsCattleDisease OutbreaksDNA, ViralEuropePhylogenyDNA, ViralCapripoxviruslumpy skin disease virusmolecular epidemiologyphylogeographyrecombination

Identifiers

PMID37905838
PMCPMC10688313
OpenAlexW4388034451

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.