Evidence map›Paper›PMID 37904914›Full record

ArticlebioRxiv : the preprint server for biology2023

Global control of cellular physiology by biomolecular condensates through modulation of electrochemical equilibria.

Yifan Dai, Zhengqing Zhou, Kyeri Kim, Nelson Rivera, Javid Mohammed, Heileen Hsu-Kim, Ashutosh Chilkoti, Lingchong You

Open access · greenAbstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 7 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Yifan DaiDepartment of Biomedical Engineering, Duke University, Durham, NC, 27708.
Zhengqing ZhouDepartment of Biomedical Engineering, Duke University, Durham, NC, 27708.
Kyeri KimDepartment of Biomedical Engineering, Duke University, Durham, NC, 27708.
Nelson RiveraDepartment of Civil and Environmental Engineering, Duke University, Durham, NC, 27708.
Javid MohammedDepartment of Immunology, Duke University, Durham, NC, 27705.
Heileen Hsu-KimDepartment of Civil and Environmental Engineering, Duke University, Durham, NC, 27708.
Ashutosh ChilkotiDepartment of Biomedical Engineering, Duke University, Durham, NC, 27708.
Lingchong YouDepartment of Biomedical Engineering, Duke University, Durham, NC, 27708.
Duke University · US

Funding

Genetically Encoded Smart Biohybrid MaterialsR35GM127042 · NIGMS · DUKE UNIVERSITY · PI CHILKOTI, ASHUTOSH · 2018 to 2022
$2.2M
NIGMS NIH HHS R35 GM127042
6 · The paper itself

Abstract

Control of the electrochemical environment in living cells is typically attributed to ion channels. Here we show that the formation of biomolecular condensates can modulate the electrochemical environment in cells, which affects processes globally within the cell and interactions of the cell with its environment. Condensate formation results in the depletion or enrichment of certain ions, generating intracellular ion gradients. These gradients directly affect the electrochemical properties of a cell, including the cytoplasmic pH and hyperpolarization of the membrane potential. The modulation of the electrochemical equilibria between the intra- and extra-cellular environments by biomolecular condensates governs charge-dependent uptake of small molecules by cells, and thereby directly influences bacterial survival under antibiotic stress. The shift of the intracellular electrochemical equilibria by condensate formation also drives a global change of the gene expression profile. The control of the cytoplasmic environment by condensates is correlated with their volume fraction, which can be highly variable between cells due to the stochastic nature of gene expression at the single cell level. Thus, condensate formation can amplify cell-cell variability of the environmental effects induced by the shift of cellular electrochemical equilibria. Our work reveals new biochemical functions of condensates, which extend beyond the biomolecules driving and participating in condensate formation, and uncovers a new role of biomolecular condensates in cellular regulation.

Identifiers

PMID37904914
PMCPMC10614965
OpenAlexW4387809078

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.