Evidence map›Paper›PMID 37904289›Full record

ArticleFEBS letters2024

Structure-based design of peptidomimetic inhibitors of PSD-95 with improved affinity for the PDZ3 domain.

Mandar T Naik, Nandita Naik, Tony Hu, Szu-Huan Wang, John Marshall

Open access · bronzeAbstract readLetter
In one paragraph

Article in FEBS letters, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Peptidomimetic inhibitors targeting TrkB/PSD-95 signaling improves cognition and seizure outcomes in an Angelman Syndrome mouse model.Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology · 2025
    Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Mandar T NaikDepartment of Molecular Biology, Cell Biology and Biochemistry, Brown University, Providence, RI, USA.ORCID 0000-0002-7016-572X
Nandita NaikDepartment of Molecular Biology, Cell Biology and Biochemistry, Brown University, Providence, RI, USA.
Tony HuDepartment of Molecular Pharmacology, Physiology and Biotechnology, Brown University, Providence, RI, USA.
Szu-Huan WangDepartment of Molecular Biology, Cell Biology and Biochemistry, Brown University, Providence, RI, USA.
John MarshallDepartment of Molecular Biology, Cell Biology and Biochemistry, Brown University, Providence, RI, USA.
Brown University · US

Funding

A Novel Cyclic Peptide-Based Treatment for TBIR01NS094440 · NINDS · RHODE ISLAND HOSPITAL · PI CHODOBSKI, ADAM, MARSHALL, JOHN · 2016 to 2020
$2.6M
Development of a lead cyclic-PDZ-Enhancer drug for Anxiety and DepressionR41MH118747 · NIMH · AINGEAL, LLC · PI MARSHALL, JOHN, MATHIOWITZ, EDITH · 2019 to 2020
$911k
A Novel BDNF Potentiator for the Treatment of Neonatal Brain InjuryR21NS133544 · NINDS · BROWN UNIVERSITY · PI CHEN, XIAODI FELIX, MARSHALL, JOHN · 2024 to 2025
$483k
A novel BDNF potentiator for Treating Cognitive Dysfunction in Angelman SyndromeR21MH104252 · NIMH · BROWN UNIVERSITY · PI MARSHALL, JOHN · 2016 to 2017
$447k
NIMH NIH HHS R21 MH104252NIMH NIH HHS R21MH104252NIMH NIH HHS R41 MH118747NIMH NIH HHS R41MH118747NINDS NIH HHS R01 NS094440NINDS NIH HHS R01NS094440NINDS NIH HHS R21 NS133544
6 · The paper itself

Abstract

Aberrant brain-derived neurotrophic factor (BDNF) signaling has been proposed to contribute to the pathophysiology of depression and other neurological disorders such as Angelman syndrome. We have previously shown that targeting the tropomyosin receptor kinase B/postsynaptic density protein-95 (PSD-95) nexus in the BDNF signaling pathway by peptidomimetic inhibitors is a promising approach for therapeutic intervention. Here, we used structure-based knowledge to develop a new Syn3 peptidomimetic compound series that fuses peptides derived from the PSD-95-binding protein SynGAP to our prototype compound CN2097. The new compounds target the PSD-95 PDZ3 domain and adjoining αC helix to achieve bivalent binding that results in up to 7-fold stronger affinity compared to CN2097. These compounds were designed to improve CN2097 specificity for the PSD-95 PDZ3 domain, and structure-activity relationship studies were performed to improve their resistance to proteolysis.

Indexed as

Brain-Derived Neurotrophic FactorPeptidomimeticsDisks Large Homolog 4 ProteinPDZ DomainsSignal TransductionBrain-Derived Neurotrophic FactorDisks Large Homolog 4 ProteinPeptidomimeticsAngelman syndromedepressionNMRPSD-95structure-based drug design

Identifiers

PMID37904289
PMCPMC10842001
OpenAlexW4388035402

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.