Evidence map›Paper›PMID 37904080›Full record

ArticleBMC bioinformatics2023

LncRNA-protein interaction prediction with reweighted feature selection.

Guohao Lv, Yingchun Xia, Zhao Qi, Zihao Zhao, Lianggui Tang, Cheng Chen, Shuai Yang, Qingyong Wang, Lichuan Gu

Abstract read
In one paragraph

Article in BMC bioinformatics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Guohao LvSchool of Information and Computer, Anhui Agricultural University, Hefei, 230036, Anhui, China.
Yingchun XiaSchool of Information and Computer, Anhui Agricultural University, Hefei, 230036, Anhui, China.
Zhao QiSchool of Information and Computer, Anhui Agricultural University, Hefei, 230036, Anhui, China.
Zihao ZhaoSchool of Information and Computer, Anhui Agricultural University, Hefei, 230036, Anhui, China.
Lianggui TangSchool of Information and Computer, Anhui Agricultural University, Hefei, 230036, Anhui, China.
Cheng ChenSchool of Information and Computer, Anhui Agricultural University, Hefei, 230036, Anhui, China.
Shuai YangSchool of Information and Computer, Anhui Agricultural University, Hefei, 230036, Anhui, China.
Qingyong WangSchool of Information and Computer, Anhui Agricultural University, Hefei, 230036, Anhui, China.
Lichuan GuSchool of Information and Computer, Anhui Agricultural University, Hefei, 230036, Anhui, China. glc@ahau.edu.cn.

Funding

Anhui Agricultural University Youth Fund K2148002Anhui Provincial Key Project of Higher Education Scientific Research (Key Project of the Provincial Education Department) 2022AH050889Anhui University collaborative innovation project GXXT-2022-046National Natural Science Foundation of China 31771679National Natural Science Foundation of China 62306008National Natural Science Foundation of China Youth Science Foundation Project 32202891Natural Science Foundation of Anhui Province 2308085MF217Natural Science Research Project of Education Department of Anhui Province of China 2023AH051020
6 · The paper itself

Abstract

LncRNA-protein interactions are ubiquitous in organisms and play a crucial role in a variety of biological processes and complex diseases. Many computational methods have been reported for lncRNA-protein interaction prediction. However, the experimental techniques to detect lncRNA-protein interactions are laborious and time-consuming. Therefore, to address this challenge, this paper proposes a reweighting boosting feature selection (RBFS) method model to select key features. Specially, a reweighted apporach can adjust the contribution of each observational samples to learning model fitting; let higher weights are given more influence samples than those with lower weights. Feature selection with boosting can efficiently rank to iterate over important features to obtain the optimal feature subset. Besides, in the experiments, the RBFS method is applied to the prediction of lncRNA-protein interactions. The experimental results demonstrate that our method achieves higher accuracy and less redundancy with fewer features.

Indexed as

RNA, Long NoncodingComputational BiologyRNA, Long NoncodingBoostingFeature selectionLncRNA–protein predictionProtein sequenceReweighting

Identifiers

PMID37904080
PMCPMC10617115

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.