ArticleThe journal of physical chemistry letters2023
Direct Calculation of Electron Transfer Rates with the Binless Dynamic Histogram Analysis Method.
Article in The journal of physical chemistry letters, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.
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1 citing paper in PubMed.
- Probing Nonadiabaticity of Proton-Coupled Electron Transfer in Ribonucleotide Reductase.The journal of physical chemistry letters · 2024Article
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3 authors.
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Abstract
Umbrella sampling molecular dynamics simulations are widely used to enhance sampling along the reaction coordinates of chemical reactions. The effect of the artificial bias can be removed using methods such as the dynamic weighted histogram analysis method (DHAM), which in addition to the global free energy profile also provides kinetic information about barrier-crossing rates directly from the Markov matrix. Here we present a binless formulation of DHAM that extends DHAM to high-dimensional and Hamiltonian-based biasing to allow the study of electron transfer (ET) processes, for which enhanced sampling is usually not possible based on simple geometric grounds. We show the capabilities of binless DHAM on examples such as aqueous ferrous-ferric ET and intramolecular ET in the radical anion of benzoquinone-tetrathiafulvalene-benzoquinone (Q-TTF-Q)
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