Evidence map›Paper›PMID 37903273›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2023

Molecular basis for Nse5-6 mediated regulation of Smc5/6 functions.

Shibai Li, You Yu, Jian Zheng, Victoria Miller-Browne, Zheng Ser, Huihui Kuang, Dinshaw J Patel, Xiaolan Zhao

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Shibai Li *Molecular Biology Program, Memorial Sloan-Kettering Cancer Center, New York, NY 10065.ORCID 0000-0001-9293-6006
You Yu *Structural Biology Program, Memorial Sloan-Kettering Cancer Center, New York, NY 10065.ORCID 0000-0002-2311-7477
Jian ZhengMolecular Biology Program, Memorial Sloan-Kettering Cancer Center, New York, NY 10065.
Victoria Miller-BrowneMolecular Biology Program, Memorial Sloan-Kettering Cancer Center, New York, NY 10065.
Zheng SerFunctional Proteomics Laboratory, Institute of Molecular and Cell Biology, Agency for Science, Technology and Research, Proteos, Singapore 138673, Singapore.
Huihui KuangSimons Electron Microscopy Center, New York Structural Biology Center, New York, NY 10027.
Dinshaw J PatelStructural Biology Program, Memorial Sloan-Kettering Cancer Center, New York, NY 10065.ORCID 0000-0002-9779-7778
Xiaolan ZhaoMolecular Biology Program, Memorial Sloan-Kettering Cancer Center, New York, NY 10065.ORCID 0000-0002-8302-6905
Memorial Sloan Kettering Cancer Center · USAgency for Science, Technology and Research · SGNew York Structural Biology Center · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI SELWYN M VICKERS · 1985 to 2026
$347.4M
Virology Research Program (Program 4)P30CA016086 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Deborah F. Tate · 1985 to 2026
$201.5M
NCCAT: National Center for CryoEM Access and Training- Supplement for Windows 10 and FFIU24GM129539 · NIGMS · NEW YORK STRUCTURAL BIOLOGY CENTER · PI DE MARCO, ALEX, KIEFT, JEFFREY S · 2018 to 2023
$53.9M
Regulation of genome replication, recombination, and stress responseR35GM145260 · NIGMS · SLOAN-KETTERING INST CAN RESEARCH · PI Xiaolan Zhao · 2022 to 2026
$3.6M
Molecular Biophysics Training ProgramT32GM132081 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI Olga Boudker, David Eliezer · 2020 to 2026
$1.3M
NCI NIH HHS P30 CA008748NCI NIH HHS P30 CA016086NIGMS NIH HHS R35 GM145260NIGMS NIH HHS T32 GM132081NIGMS NIH HHS U24 GM129539
6 · The paper itself

Abstract

The Smc5/6 complex (Smc5/6) is important for genome replication and repair in eukaryotes. Its cellular functions are closely linked to the ATPase activity of the Smc5 and Smc6 subunits. This activity requires the dimerization of the motor domains of the two SMC subunits and is regulated by the six non-SMC subunits (Nse1 to Nse6). Among the NSEs, Nse5 and Nse6 form a stable subcomplex (Nse5-6) that dampens the ATPase activity of the complex. However, the underlying mechanisms and biological significance of this regulation remain unclear. Here, we address these issues using structural and functional studies. We determined cryo-EM structures of the yeast Smc5/6 derived from complexes consisting of either all eight subunits or a subset of five subunits. Both structures reveal that Nse5-6 associates with Smc6's motor domain and the adjacent coiled-coil segment, termed the neck region. Our structural analyses reveal that this binding is compatible with motor domain dimerization but results in dislodging the Nse4 subunit from the Smc6 neck. As the Nse4-Smc6 neck interaction favors motor domain engagement and thus ATPase activity, Nse6's competition with Nse4 can explain how Nse5-6 disfavors ATPase activity. Such regulation could in principle differentially affect Smc5/6-mediated processes depending on their needs of the complex's ATPase activity. Indeed, mutagenesis data in cells provide evidence that the Nse6-Smc6 neck interaction is important for the resolution of DNA repair intermediates but not for replication termination. Our results thus provide a molecular basis for how Nse5-6 modulates the ATPase activity and cellular functions of Smc5/6.

Indexed as

Chromosomal Proteins, Non-HistoneDNA RepairAdenosine TriphosphatasesCell Cycle ProteinsDNA ReplicationSaccharomyces cerevisiaeAdenosine TriphosphatasesCell Cycle ProteinsChromosomal Proteins, Non-Histonecryo-EMhomologous recombinationNse5-6SMCSmc5/6

Identifiers

PMID37903273
PMCPMC10636319
OpenAlexW4388017429

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.