Evidence map›Paper›PMID 37897361›Full record

ArticleNucleic acids research2024

AnimalMetaOmics: a multi-omics data resources for exploring animal microbial genomes and microbiomes.

Ruirui Hu, Fulin Li, Yifan Chen, Chuyang Liu, Jiawei Li, Zhongchen Ma, Yue Wang, Chaowen Cui, Chengfang Luo, Ping Zhou and 3 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.9field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 1 country.

Ruirui HuCollege of Life Sciences, Shihezi University, Shihezi, Xinjiang 832003, China.
Fulin LiCollege of Life Sciences, Shihezi University, Shihezi, Xinjiang 832003, China.
Yifan ChenState Key Laboratory of Sheep Genetic Improvement and Healthy Production, Xinjiang Academy of Agricultural and Reclamation Science, Xinjiang 832003, China.
Chuyang LiuCollege of Life Sciences, Shihezi University, Shihezi, Xinjiang 832003, China.
Jiawei LiState Key Laboratory of Sheep Genetic Improvement and Healthy Production, Xinjiang Academy of Agricultural and Reclamation Science, Xinjiang 832003, China.
Zhongchen MaCollege of Animal Science and Technology, Shihezi University, Shihezi, Xinjiang 832003, China.
Yue WangCollege of Life Sciences, Shihezi University, Shihezi, Xinjiang 832003, China.
Chaowen CuiCollege of Life Sciences, Shihezi University, Shihezi, Xinjiang 832003, China.
Chengfang LuoState Key Laboratory of Sheep Genetic Improvement and Healthy Production, Xinjiang Academy of Agricultural and Reclamation Science, Xinjiang 832003, China.
Ping ZhouState Key Laboratory of Sheep Genetic Improvement and Healthy Production, Xinjiang Academy of Agricultural and Reclamation Science, Xinjiang 832003, China.
Wei NiCollege of Life Sciences, Shihezi University, Shihezi, Xinjiang 832003, China.
Qing-Yong YangState Key Laboratory of Sheep Genetic Improvement and Healthy Production, Xinjiang Academy of Agricultural and Reclamation Science, Xinjiang 832003, China.ORCID 0000-0002-3510-8906
Shengwei HuCollege of Life Sciences, Shihezi University, Shihezi, Xinjiang 832003, China.ORCID 0000-0001-8849-265X
Shihezi University · CNHuazhong Agricultural University · CNXinjiang Academy of Agricultural and Reclamation Science · CN

Funding

Foundation of state key laboratory of sheep genetic improvement and healthy production 2021ZD01The Tird Xinjiang Scientifc Expedition Program 2022xjkk1202Tianshan Talent Project
6 · The paper itself

Abstract

The Animal Meta-omics landscape database (AnimalMetaOmics, https://yanglab.hzau.edu.cn/animalmetaomics#/) is a comprehensive and freely available resource that includes metagenomic, metatranscriptomic, and metaproteomic data from various non-human animal species and provides abundant information on animal microbiomes, including cluster analysis of microbial cognate genes, functional gene annotations, active microbiota composition, gene expression abundance, and microbial protein identification. In this work, 55 898 microbial genomes were annotated from 581 animal species, including 42 924 bacterial genomes, 12 336 virus genomes, 496 archaea genomes and 142 fungi genomes. Moreover, 321 metatranscriptomic datasets were analyzed from 31 animal species and 326 metaproteomic datasets from four animal species, as well as the pan-genomic dynamics and compositional characteristics of 679 bacterial species and 13 archaea species from animal hosts. Researchers can efficiently access and acquire the information of cross-host microbiota through a user-friendly interface, such as species, genomes, activity levels, expressed protein sequences and functions, and pan-genome composition. These valuable resources provide an important reference for better exploring the classification, functional diversity, biological process diversity and functional genes of animal microbiota.

Indexed as

Databases, GeneticMicrobiotaMultiomicsAnimalsBacteriaGenome, MicrobialMetagenome

Identifiers

PMID37897361
PMCPMC10768125
OpenAlexW4388007113

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.