Evidence map›Paper›PMID 37897358›Full record

ArticleNucleic acids research2023

Structural and functional investigation of GajB protein in Gabija anti-phage defense.

Hyejin Oh, Jasung Koo, So Young An, Sung-Hyun Hong, Jeong-Yong Suh, Euiyoung Bae

Abstract read
In one paragraph

Article in Nucleic acids research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. AmBio · 2024
    Article
  6. AbioRxiv : the preprint server for biology · 2024
    Article
  7. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Hyejin OhDepartment of Agricultural Biotechnology, Seoul National University, Seoul 08826, Korea.
Jasung KooDepartment of Agricultural Biotechnology, Seoul National University, Seoul 08826, Korea.
So Young AnDepartment of Agricultural Biotechnology, Seoul National University, Seoul 08826, Korea.
Sung-Hyun HongDepartment of Agricultural Biotechnology, Seoul National University, Seoul 08826, Korea.
Jeong-Yong SuhDepartment of Agricultural Biotechnology, Seoul National University, Seoul 08826, Korea.ORCID 0000-0001-8720-3844
Euiyoung BaeDepartment of Agricultural Biotechnology, Seoul National University, Seoul 08826, Korea.ORCID 0000-0001-7865-0167

Funding

Korea government (MSIT) NRF-2022R1A2C1009804Rural Development Administration PJ01653401Seoul National University
6 · The paper itself

Abstract

Bacteriophages (phages) are viruses that infect bacteria and archaea. To fend off invading phages, the hosts have evolved a variety of anti-phage defense mechanisms. Gabija is one of the most abundant prokaryotic antiviral systems and consists of two proteins, GajA and GajB. GajA has been characterized experimentally as a sequence-specific DNA endonuclease. Although GajB was previously predicted to be a UvrD-like helicase, its function is unclear. Here, we report the results of structural and functional analyses of GajB. The crystal structure of GajB revealed a UvrD-like domain architecture, including two RecA-like core and two accessory subdomains. However, local structural elements that are important for the helicase function of UvrD are not conserved in GajB. In functional assays, GajB did not unwind or bind various types of DNA substrates. We demonstrated that GajB interacts with GajA to form a heterooctameric Gabija complex, but GajB did not exhibit helicase activity when bound to GajA. These results advance our understanding of the molecular mechanism underlying Gabija anti-phage defense and highlight the role of GajB as a component of a multi-subunit antiviral complex in bacteria.

Indexed as

Bacillus cereusBacteriophagesAntiviral AgentsBacteriaBacterial ProteinsDNADNA HelicasesProteinsAntiviral AgentsBacterial ProteinsDNADNA HelicasesProteins

Identifiers

PMID37897358
PMCPMC10681800

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.