Evidence map›Paper›PMID 37896815›Full record

ArticleViruses2023

Genomic Analysis and Taxonomic Characterization of Seven Bacteriophage Genomes Metagenomic-Assembled from the Dishui Lake.

Haoyun Cai, Yifan Zhou, Xiefei Li, Tianqi Xu, Yimin Ni, Shuang Wu, Yongxin Yu, Yongjie Wang

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Viruses, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 9 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Haoyun CaiCollege of Food Science and Technology, Shanghai Ocean University, Shanghai 201306, China.ORCID 0000-0003-0422-3343
Yifan ZhouCollege of Food Science and Technology, Shanghai Ocean University, Shanghai 201306, China.ORCID 0000-0002-5176-2852
Xiefei LiCollege of Food Science and Technology, Shanghai Ocean University, Shanghai 201306, China.
Tianqi XuCollege of Food Science and Technology, Shanghai Ocean University, Shanghai 201306, China.
Yimin NiCollege of Food Science and Technology, Shanghai Ocean University, Shanghai 201306, China.ORCID 0000-0003-0038-6268
Shuang WuCollege of Food Science and Technology, Shanghai Ocean University, Shanghai 201306, China.
Yongxin YuCollege of Food Science and Technology, Shanghai Ocean University, Shanghai 201306, China.
Yongjie WangCollege of Food Science and Technology, Shanghai Ocean University, Shanghai 201306, China.ORCID 0000-0002-7209-585X
Shanghai Ocean University · CNQingdao National Laboratory for Marine Science and Technology · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Viruses in aquatic ecosystems exhibit remarkable abundance and diversity. However, scattered studies have been conducted to mine uncultured viruses and identify them taxonomically in lake water. Here, whole genomes (29-173 kbp) of seven uncultured dsDNA bacteriophages were discovered in Dishui Lake, the largest artificial lake in Shanghai. We analyzed their genomic signatures and found a series of viral auxiliary metabolic genes closely associated with protein synthesis and host metabolism. Dishui Lake phages shared more genes with uncultivated environmental viruses than with reference viruses based on the gene-sharing network classification. Phylogeny of proteomes and comparative genomics delineated three new genera within two known viral families of

Indexed as

BacteriophagesVirusesChinaEcosystemGenome, ViralGenomicsLakesPhylogenybacteriophagefreshwater lakegenometaxonomyvirus diversity

Identifiers

PMID37896815
PMCPMC10611076
OpenAlexW4387230715

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.