Evidence map›Paper›PMID 37896036›Full record

ArticlePlants (Basel, Switzerland)2023

In Silico Verification of Predicted Potential Promoter Sequences in the Rice (

Anastasiya N Bubnova, Irina V Yakovleva, Eugene V Korotkov, Anastasiya M Kamionskaya

Open access · goldAbstract read
In one paragraph

Article in Plants (Basel, Switzerland), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.8field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Anastasiya N BubnovaFederal State Institution Federal Research Centre «Fundamentals of Biotechnology», Russian Academy of Sciences, 119071 Moscow, Russia.ORCID 0000-0002-6510-9600
Irina V YakovlevaFederal State Institution Federal Research Centre «Fundamentals of Biotechnology», Russian Academy of Sciences, 119071 Moscow, Russia.ORCID 0000-0002-1568-8907
Eugene V KorotkovFederal State Institution Federal Research Centre «Fundamentals of Biotechnology», Russian Academy of Sciences, 119071 Moscow, Russia.ORCID 0000-0003-2960-8936
Anastasiya M KamionskayaFederal State Institution Federal Research Centre «Fundamentals of Biotechnology», Russian Academy of Sciences, 119071 Moscow, Russia.ORCID 0000-0001-9815-9578
Russian Academy of Sciences · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The exact identification of promoter sequences remains a serious problem in computational biology, as the promoter prediction algorithms under development continue to produce false-positive results. Therefore, to fully assess the validity of predicted sequences, it is necessary to perform a comprehensive test of their properties, such as the presence of downstream transcribed DNA regions behind them, or chromatin accessibility for transcription factor binding. In this paper, we examined the promoter sequences of chromosome 1 of the rice

Indexed as

Oryza sativapredicted sequencespromoterregulatory elements of genomericetranscription

Identifiers

PMID37896036
PMCPMC10609952
OpenAlexW4387642699

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.