Evidence map›Paper›PMID 37895233›Full record

ArticleGenes2023

Detection of Cancer-Associated Gene Mutations in Urinary Cell-Free DNA among Prostate Cancer Patients in South Africa.

Dada Oluwaseyi Temilola, Martha Wium, Juliano Paccez, Azola Samkele Salukazana, Solomon O Rotimi, Hasan H Otu, Giuseppina M Carbone, Lisa Kaestner, Stefano Cacciatore, Luiz Fernando Zerbini

Open access · goldAbstract read
In one paragraph

Article in Genes, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed, 2 pooled it
1.9field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 2 syntheses or guidelines pooled it, 8 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Review
  4. Article
  5. Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 4 countries.

Dada Oluwaseyi TemilolaInternational Centre for Genetic Engineering and Biotechnology (ICGEB), Cape Town 7925, South Africa.ORCID 0000-0002-8470-0666
Martha WiumInternational Centre for Genetic Engineering and Biotechnology (ICGEB), Cape Town 7925, South Africa.
Juliano PaccezInternational Centre for Genetic Engineering and Biotechnology (ICGEB), Cape Town 7925, South Africa.ORCID 0000-0002-1086-4588
Azola Samkele SalukazanaDivision of Urology, University of Cape Town, Groote Schuur Hospital, Cape Town 7925, South Africa.
Solomon O RotimiBiochemistry Department, Covenant University, Ota 112104, Nigeria.ORCID 0000-0002-3678-9977
Hasan H OtuDepartment of Electrical and Computer Engineering, University of Nebraska-Lincoln, Lincoln, NE 68588, USA.
Giuseppina M CarboneInstitute of Oncology Research (IOR), Università della Svizzera italiana, 6900 Bellinzona, Switzerland.
Lisa KaestnerDivision of Urology, University of Cape Town, Groote Schuur Hospital, Cape Town 7925, South Africa.
Stefano CacciatoreInternational Centre for Genetic Engineering and Biotechnology (ICGEB), Cape Town 7925, South Africa.ORCID 0000-0001-7052-7156
Luiz Fernando ZerbiniInternational Centre for Genetic Engineering and Biotechnology (ICGEB), Cape Town 7925, South Africa.ORCID 0000-0003-0736-9508
International Centre for Genetic Engineering and Biotechnology · ZAUniversity of Cape Town · ZACovenant University · NGInstitute of Oncology Research · CHUniversity of Nebraska–Lincoln · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Prostate cancer (PCa) is the most common cause of cancer death among African men. The presence of tumor-specific variations in cell-free DNA (cfDNA), such as mutations, microsatellite instability, and DNA methylation, has been explored as a source of biomarkers for cancer diagnosis. In this study, we investigated the diagnostic role of cfDNA among South African PCa patients. We performed whole exome sequencing (WES) of urinary cfDNA. We identified a novel panel of 31 significantly deregulated somatic mutated genes between PCa and benign prostatic hyperplasia (BPH). Additionally, we performed whole-genome sequencing (WGS) on matching PCa and normal prostate tissue in an independent PCa cohort from South Africa. Our results suggest that the mutations are of germline origin as they were also found in the normal prostate tissue. In conclusion, our study contributes to the knowledge of cfDNA as a biomarker for diagnosing PCa in the South African population.

Indexed as

Cell-Free Nucleic AcidsProstatic HyperplasiaProstatic NeoplasmsBiomarkersHumansMaleMutationSouth AfricaBiomarkersCell-Free Nucleic AcidscfDNAprostate cancerSNVsSouth AfricaWGS

Identifiers

PMID37895233
PMCPMC10606409
OpenAlexW4387120851

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.