Evidence map›Paper›PMID 37894717›Full record

ArticleInternational journal of molecular sciences2023

The Intrinsically Disordered N Terminus in Atg12 from Yeast Is Necessary for the Functional Structure of the Protein.

Hana Popelka, Vikramjit Lahiri, Wayne D Hawkins, Felipe da Veiga Leprevost, Alexey I Nesvizhskii, Daniel J Klionsky

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.1field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 5 citations in OpenAlex.

  1. Review
  2. Review
  3. Autophagy · 2026
    Review
  4. Article
  5. Article
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Hana PopelkaLife Sciences Institute, University of Michigan, Ann Arbor, MI 48109, USA.
Vikramjit LahiriLife Sciences Institute, University of Michigan, Ann Arbor, MI 48109, USA.ORCID 0000-0002-7066-094X
Wayne D HawkinsLife Sciences Institute, University of Michigan, Ann Arbor, MI 48109, USA.
Felipe da Veiga LeprevostDepartment of Pathology, Michigan Medicine, University of Michigan, Ann Arbor, MI 48109, USA.ORCID 0000-0002-8228-5374
Alexey I NesvizhskiiDepartment of Pathology, Michigan Medicine, University of Michigan, Ann Arbor, MI 48109, USA.ORCID 0000-0002-2806-7819
Daniel J KlionskyLife Sciences Institute, University of Michigan, Ann Arbor, MI 48109, USA.ORCID 0000-0002-7828-8118
University of Michigan · USMichigan Medicine · US

Funding

The mechanism and regulation of autophagyR35GM131919 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI DANIEL J. KLIONSKY · 2019 to 2026
$6.4M
COMPUTATIONAL TOOLS FOR MASS SPECTROMETRY-BASED INTERACTOME DATAR01GM094231 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Alexey I Nesvizhskii · 2010 to 2026
$5.4M
NIGMS NIH HHS GM131919NIGMS NIH HHS R01 GM094231NIGMS NIH HHS R35 GM131919
6 · The paper itself

Abstract

The Atg12 protein in yeast is an indispensable polypeptide in the highly conserved ubiquitin-like conjugation system operating in the macroautophagy/autophagy pathway. Atg12 is covalently conjugated to Atg5 through the action of Atg7 and Atg10; the Atg12-Atg5 conjugate binds Atg16 to form an E3 ligase that functions in a separate conjugation pathway involving Atg8. Atg12 is comprised of a ubiquitin-like (UBL) domain preceded at the N terminus by an intrinsically disordered protein region (IDPR), a domain that comprises a major portion of the protein but remains elusive in its conformation and function. Here, we show that the IDPR in unconjugated Atg12 is positioned in proximity to the UBL domain, a configuration that is important for the functional structure of the protein. A major deletion in the IDPR disrupts intactness of the UBL domain at the unconjugated C terminus, and a mutation in the predicted α0 helix in the IDPR prevents Atg12 from binding to Atg7 and Atg10, which ultimately affects the protein function in the ubiquitin-like conjugation cascade. These findings provide evidence that the IDPR is an indispensable part of the Atg12 protein from yeast.

Indexed as

Autophagy-Related Protein 12Saccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsAutophagyAutophagy-Related Protein 5Autophagy-Related ProteinsUbiquitinUbiquitin-Protein LigasesATG12 protein, S cerevisiaeAutophagy-Related Protein 12Autophagy-Related Protein 5Autophagy-Related ProteinsSaccharomyces cerevisiae ProteinsUbiquitinUbiquitin-Protein Ligasesautophagycrosslinking mass spectrometryintrinsically disordered protein regionubiquitin-like conjugation system

Identifiers

PMID37894717
PMCPMC10606595
OpenAlexW4387500631

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.