Evidence map›Paper›PMID 37894618›Full record

ArticleMolecules (Basel, Switzerland)2023

A Workflow Combining Machine Learning with Molecular Simulations Uncovers Potential Dual-Target Inhibitors against BTK and JAK3.

Lu Liu, Risong Na, Lianjuan Yang, Jixiang Liu, Yingjia Tan, Xi Zhao, Xuri Huang, Xuecheng Chen

Open access · goldAbstract read
In one paragraph

Article in Molecules (Basel, Switzerland), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.4field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Lu LiuInstitute of Theoretical Chemistry, Jilin University, Changchun 130061, China.ORCID 0009-0007-7664-8283
Risong NaCollaborative Innovation Center of Henan Grain Crops, National Key Laboratory of Wheat and Maize Crop Science, College of Plant Protection, Henan Agricultural University, Zhengzhou 450002, China.ORCID 0000-0001-5203-2061
Lianjuan YangDepartment of Medical Mycology, Shanghai Skin Disease Hospital, Tongji University School of Medicine, Shanghai 200443, China.
Jixiang LiuInstitute of Theoretical Chemistry, Jilin University, Changchun 130061, China.ORCID 0009-0000-9929-611X
Yingjia TanInstitute of Theoretical Chemistry, Jilin University, Changchun 130061, China.
Xi ZhaoInstitute of Theoretical Chemistry, Jilin University, Changchun 130061, China.ORCID 0000-0002-2403-522X
Xuri HuangInstitute of Theoretical Chemistry, Jilin University, Changchun 130061, China.
Xuecheng ChenDepartment of Nanomaterials Physicochemistry, Faculty of Chemical Technology and Engineering, West Pomeranian University of Technology, Szczecin Piastów Ave. 42, 71-065 Szczecin, Poland.ORCID 0000-0002-8874-5642
Jilin University · CNHenan Agricultural University · CNTongji University · CNWest Pomeranian University of Technology in Szczecin · PL

Funding

National Natural Science Foundation of China (NSFC) 8217121063. 8217121063National Science Center (NCN), Poland UMO-2020/39/B/ST8/02937
6 · The paper itself

Abstract

The drug development process suffers from low success rates and requires expensive and time-consuming procedures. The traditional one drug-one target paradigm is often inadequate to treat multifactorial diseases. Multitarget drugs may potentially address problems such as adverse reactions to drugs. With the aim to discover a multitarget potential inhibitor for B-cell lymphoma treatment, herein, we developed a general pipeline combining machine learning, the interpretable model SHapley Additive exPlanation (SHAP), and molecular dynamics simulations to predict active compounds and fragments. Bruton's tyrosine kinase (BTK) and Janus kinase 3 (JAK3) are popular synergistic targets for B-cell lymphoma. We used this pipeline approach to identify prospective potential dual inhibitors from a natural product database and screened three candidate inhibitors with acceptable drug absorption, distribution, metabolism, excretion, and toxicity (ADMET) properties. Ultimately, the compound CNP0266747 with specialized binding conformations that exhibited potential binding free energy against BTK and JAK3 was selected as the optimum choice. Furthermore, we also identified key residues and fingerprint features of this dual-target inhibitor of BTK and JAK3.

Indexed as

Janus Kinase 3Lymphoma, B-CellAgammaglobulinaemia Tyrosine KinaseHumansProtein Kinase InhibitorsWorkflowAgammaglobulinaemia Tyrosine KinaseJAK3 protein, humanJanus Kinase 3Protein Kinase InhibitorsBTKJAK3machine learningmolecular dynamics simulationSHAPvirtual screening

Identifiers

PMID37894618
PMCPMC10608827
OpenAlexW4387707177

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.