Evidence map›Paper›PMID 37894133›Full record

ArticleMicroorganisms2023

Bioprospecting of Actinobacterial Diversity and Antibacterial Secondary Metabolites from the Sediments of Four Saline Lakes on the Northern Tibetan Plateau.

Shao-Wei Liu, Xiao-Xu Zhai, Di Liu, Yu-Yu Liu, Li-Ying Sui, Ke-Ke Luo, Qin Yang, Fei-Na Li, Arina A Nikandrova, Arina N Imamutdinova and 7 more

Open access · goldAbstract read
In one paragraph

Article in Microorganisms, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
  3. Observational
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 6 institutions in 2 countries.

Shao-Wei LiuDepartment of Microbial Chemistry, Beijing Key Laboratory of Antimicrobial Agents, Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences, Peking Union Medical College, Beijing 100050, China.ORCID 0000-0002-4614-4857
Xiao-Xu ZhaiDepartment of Microbial Chemistry, Beijing Key Laboratory of Antimicrobial Agents, Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences, Peking Union Medical College, Beijing 100050, China.
Di LiuDepartment of Microbial Chemistry, Beijing Key Laboratory of Antimicrobial Agents, Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences, Peking Union Medical College, Beijing 100050, China.
Yu-Yu LiuDepartment of Microbial Chemistry, Beijing Key Laboratory of Antimicrobial Agents, Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences, Peking Union Medical College, Beijing 100050, China.
Li-Ying SuiCollege of Marine and Environmental Sciences, Tianjin University of Science and Technology, Tianjin 300457, China.
Ke-Ke LuoDepartment of Microbial Chemistry, Beijing Key Laboratory of Antimicrobial Agents, Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences, Peking Union Medical College, Beijing 100050, China.
Qin YangDepartment of Microbial Chemistry, Beijing Key Laboratory of Antimicrobial Agents, Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences, Peking Union Medical College, Beijing 100050, China.
Fei-Na LiLaboratory of Respiratory Diseases, Beijing Key Laboratory of Pediatric Respiratory Infection Diseases, Beijing Pediatric Research Institute, Beijing Children's Hospital, Capital Medical University, Key Laboratory of Major Diseases in Children, Ministry of Education, National Clinical Research Center for Respiratory Diseases, National Center for Children's Health, Beijing 100045, China.
Arina A NikandrovaCenter of Life Sciences, Skolkovo Institute of Science and Technology, 121205 Moscow, Russia.ORCID 0000-0003-1425-1145
Arina N ImamutdinovaCenter of Life Sciences, Skolkovo Institute of Science and Technology, 121205 Moscow, Russia.
Dmitrii A LukianovCenter of Life Sciences, Skolkovo Institute of Science and Technology, 121205 Moscow, Russia.ORCID 0000-0003-1413-9559
Ilya A OstermanCenter of Life Sciences, Skolkovo Institute of Science and Technology, 121205 Moscow, Russia.ORCID 0000-0001-7748-980X
Petr V SergievCenter of Life Sciences, Skolkovo Institute of Science and Technology, 121205 Moscow, Russia.ORCID 0000-0001-8866-1863
Ben-Yin ZhangCollege of Eco-Environmental Engineering, Qinghai University, Xining 810016, China.ORCID 0000-0001-7672-6666
De-Jun ZhangCollege of Eco-Environmental Engineering, Qinghai University, Xining 810016, China.
Chun-Mei XueCollege of Life Sciences, Jiamusi University, Jiamusi 154000, China.
Cheng-Hang SunDepartment of Microbial Chemistry, Beijing Key Laboratory of Antimicrobial Agents, Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences, Peking Union Medical College, Beijing 100050, China.ORCID 0000-0001-6813-8274
Skolkovo Institute of Science and Technology · RUChinese Academy of Medical Sciences & Peking Union Medical College · CNQinghai University · CNJiamusi University · CNBeijing Children’s Hospital · CNTianjin University of Science and Technology · CN

Funding

Beijing National Natural Science Foundation 7222256CAMS Innovation Fund for Medical Sciences CIFMS 2021-I2M-1-028Fisheries Science and Technology Aiding Project of the Ministry of Agriculture and Rural Affairs for Tibet without NO.National Natural Sciences Foundation of China 32200001Open Project of State Key Laboratory of Plateau Ecology and Agriculture, Qinghai University 2023-KF-06Talent Training Project of Basic Research Fund of Heilongjiang Department of Education Item 2020-KYYWF-0238the Kunlun Talented People, High-end Innovation and Entrepreneurship Talents Plan of Qinghai Province without NO.The Ministry of Science and Higher Education of the Russian Federation NO. 075-15-2021-1085
6 · The paper itself

Abstract

The Tibetan Plateau, known as the "Roof of the World" and "The Third Pole", harbors numerous saline lakes primarily distributed in the Northern Tibetan Plateau. However, the challenging conditions of high altitude, low oxygen level, and harsh climate have limited investigations into the actinobacteria from these saline lakes. This study focuses on investigating the biodiversity and bioactive secondary metabolites of cultivable actinobacteria isolated from the sediments of four saline lakes on the Northern Tibetan Plateau. A total of 255 actinobacterial strains affiliated with 21 genera in 12 families of 7 orders were recovered by using the pure culture technique and 16S rRNA gene phylogenetic analysis. To facilitate a high-throughput bioactivity evaluation, 192 isolates underwent OSMAC cultivation in a miniaturized 24-well microbioreactor system (MATRIX cultivation). The antibacterial activity of crude extracts was then evaluated in a 96-well plate antibacterial assay. Forty-six strains demonstrated antagonistic effects against at least one tested pathogen, and their underlying antibacterial mechanisms were further investigated through a dual-fluorescent reporter assay (pDualrep2). Two

Indexed as

actinobacteriaantibacterial metabolitesMATRIX cultivationmolecular networkingNorthern Tibetan Plateausaline lakes

Identifiers

PMID37894133
PMCPMC10609225
OpenAlexW4387230379

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.