Evidence map›Paper›PMID 37892127›Full record

ArticleBiomolecules2023

A Structural Model for the Core Nup358-BicD2 Interface.

James M Gibson, Xiaoxin Zhao, M Yusuf Ali, Sozanne R Solmaz, Chunyu Wang

Open access · goldAbstract read
In one paragraph

Article in Biomolecules, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.4field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Advances in the understanding of nuclear pore complexes in human diseases.Journal of cancer research and clinical oncology · 2024
    Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

James M GibsonDepartment of Biological Sciences, Department of Chemistry and Chemical Biology, Center for Biotechnology and Interdisciplinary Studies, Rensselaer Polytechnic Institute, 110 8th Street, Troy, NY 12180, USA.ORCID 0000-0002-9378-0135
Xiaoxin ZhaoDepartment of Chemistry, Binghamton University, P.O. Box 6000, Binghamton, NY 13902, USA.ORCID 0000-0002-5030-3929
M Yusuf AliDepartment of Molecular Physiology and Biophysics, University of Vermont, Burlington, VT 05405, USA.ORCID 0000-0003-2164-3323
Sozanne R SolmazDepartment of Chemistry, Binghamton University, P.O. Box 6000, Binghamton, NY 13902, USA.ORCID 0000-0002-1703-3701
Chunyu WangDepartment of Biological Sciences, Department of Chemistry and Chemical Biology, Center for Biotechnology and Interdisciplinary Studies, Rensselaer Polytechnic Institute, 110 8th Street, Troy, NY 12180, USA.ORCID 0000-0001-5165-7959
Binghamton University · USRensselaer Polytechnic Institute · USUniversity of Vermont · US

Funding

Regulation of bidirectional transport of the nucleus by adapter proteinsR01GM144578 · NIGMS · STATE UNIVERSITY OF NY,BINGHAMTON · PI SOLMAZ, SOZANNE R · 2022 to 2025
$1.6M
Method development for simultaneous automatic assignment and structure determination in protein NMRR21GM143507 · NIGMS · RENSSELAER POLYTECHNIC INSTITUTE · PI LAI, RONGJIE, WANG, CHUNYU · 2022 to 2023
$416k
NIGMS NIH HHS R01 GM144578NIGMS NIH HHS R21 GM143507
6 · The paper itself

Abstract

Dynein motors facilitate the majority of minus-end-directed transport events on microtubules. The dynein adaptor Bicaudal D2 (BicD2) recruits the dynein machinery to several cellular cargo for transport, including Nup358, which facilitates a nuclear positioning pathway that is essential for the differentiation of distinct brain progenitor cells. Previously, we showed that Nup358 forms a "cargo recognition α-helix" upon binding to BicD2; however, the specifics of the BicD2-Nup358 interface are still not well understood. Here, we used AlphaFold2, complemented by two additional docking programs (HADDOCK and ClusPro) as well as mutagenesis, to show that the Nup358 cargo-recognition α-helix binds to BicD2 between residues 747 and 774 in an anti-parallel manner, forming a helical bundle. We identified two intermolecular salt bridges that are important to stabilize the interface. In addition, we uncovered a secondary interface mediated by an intrinsically disordered region of Nup358 that is directly N-terminal to the cargo-recognition α-helix and binds to BicD2 between residues 774 and 800. This is the same BicD2 domain that binds to the competing cargo adapter Rab6, which is important for the transport of Golgi-derived and secretory vesicles. Our results establish a structural basis for cargo recognition and selection by the dynein adapter BicD2, which facilitates transport pathways that are important for brain development.

Indexed as

DyneinsMicrotubule-Associated ProteinsBiological TransportMicrotubulesModels, StructuralDyneinsMicrotubule-Associated ProteinsAlphaFold2Bicaudal D2dyneinintracellular transportnuclear positioningNup358

Identifiers

PMID37892127
PMCPMC10604712
OpenAlexW4387059465

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.