Evidence map›Paper›PMID 37891482›Full record

ArticleBMC ecology and evolution2023

Gene expression in notochord and nuclei pulposi: a study of gene families across the chordate phylum.

Rahul Raghavan, Ugo Coppola, Yushi Wu, Chibuike Ihewulezi, Lenny J Negrón-Piñeiro, Julie E Maguire, Justin Hong, Matthew Cunningham, Han Jo Kim, Todd J Albert and 5 more

Abstract read
In one paragraph

Article in BMC ecology and evolution, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. Fine-Tuned Expression of Evolutionarily Conserved Signaling Molecules in theInternational journal of molecular sciences · 2024
    Article
  3. Review
  4. Article
  5. Searching for marine embryos, finding my path.Genesis (New York, N.Y. : 2000) · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Rahul Raghavan *Hospital for Special Surgery, Orthopedic Soft Tissue Research Program, New York, NY, 10021, USA.
Ugo Coppola *Stazione Zoologica 'A. Dohrn', Villa Comunale 1, 80121, Naples, Italy.
Yushi Wu *Department of Molecular Pathobiology, New York University College of Dentistry, New York, NY, 10010, USA.
Chibuike Ihewulezi *Department of Molecular Pathobiology, New York University College of Dentistry, New York, NY, 10010, USA.
Lenny J Negrón-PiñeiroDepartment of Molecular Pathobiology, New York University College of Dentistry, New York, NY, 10010, USA.
Julie E MaguireDepartment of Molecular Pathobiology, New York University College of Dentistry, New York, NY, 10010, USA.
Justin HongHospital for Special Surgery, Orthopedic Soft Tissue Research Program, New York, NY, 10021, USA.
Matthew CunninghamHospital for Special Surgery, New York, NY, 10021, USA.
Han Jo KimHospital for Special Surgery, New York, NY, 10021, USA.
Todd J AlbertHospital for Special Surgery, New York, NY, 10021, USA.
Abdullah M AliDepartment of Medicine, Columbia University Irving Medical Center, New York, NY, 10032, USA.
Jean-Pierre Saint-JeannetDepartment of Molecular Pathobiology, New York University College of Dentistry, New York, NY, 10010, USA.
Filomena RistoratoreStazione Zoologica 'A. Dohrn', Villa Comunale 1, 80121, Naples, Italy.
Chitra L DahiaHospital for Special Surgery, Orthopedic Soft Tissue Research Program, New York, NY, 10021, USA. dahiac@hss.edu.
Anna Di GregorioDepartment of Molecular Pathobiology, New York University College of Dentistry, New York, NY, 10010, USA. adg13@nyu.edu.

Funding

TRAINING PROGRAM IN DEVELOPMENTAL GENETICS.T32HD007520 · NICHD · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI TREISMAN, JESSICA E · 1999 to 2023
$3.9M
Role of Developmental Signaling Pathways in Maintenance of Spinal DiscsR01AG070079 · NIA · HOSPITAL FOR SPECIAL SURGERY · PI Chitra L Dahia · 2021 to 2026
$3.3M
Role of Shh/Brachyury axis in the maintenance of the postnatal intervertebral discR01AR077145 · NIAMS · HOSPITAL FOR SPECIAL SURGERY · PI DAHIA, CHITRA L · 2021 to 2025
$3.0M
P30 Center in Craniofacial Bone BiologyP30DE020754 · NIDCR · NEW YORK UNIVERSITY · PI PARTRIDGE, NICOLA C · 2009 to 2010
$1.5M
Unraveling the essential gene regulatory network underlying notochord development in CionaR03HD098395 · NICHD · NEW YORK UNIVERSITY · PI DI GREGORIO, ANNA · 2019 to 2021
$238k
Elucidation of a Brachyury-independent branch of the notochord gene regulatory networkR03HD107314 · NICHD · NEW YORK UNIVERSITY · PI DI GREGORIO, ANNA · 2022 to 2023
$161k
The Role of the Transcription Factor NFAT5 in Notochord Development and TubulogenesisF32GM123700 · NIGMS · NEW YORK UNIVERSITY · PI MAGUIRE, JULIE · 2017 to 2018
$118k
Fluorescent StereomicroscopeS10OD026763 · OD · HOSPITAL FOR SPECIAL SURGERY · PI DAHIA, CHITRA L · 2019 to 2019
$60k
NIAMS NIH HHS R01 AR077145NIA NIH HHS R01 AG070079NICHD NIH HHS R03 HD098395NICHD NIH HHS R03 HD107314NICHD NIH HHS T32 HD007520NIDCR NIH HHS P30 DE020754NIGMS NIH HHS F32 GM123700NIH HHS S10 OD026763
6 · The paper itself

Abstract

The transition from notochord to vertebral column is a crucial milestone in chordate evolution and in prenatal development of all vertebrates. As ossification of the vertebral bodies proceeds, involutions of residual notochord cells into the intervertebral discs form the nuclei pulposi, shock-absorbing structures that confer flexibility to the spine. Numerous studies have outlined the developmental and evolutionary relationship between notochord and nuclei pulposi. However, the knowledge of the similarities and differences in the genetic repertoires of these two structures remains limited, also because comparative studies of notochord and nuclei pulposi across chordates are complicated by the gene/genome duplication events that led to extant vertebrates. Here we show the results of a pilot study aimed at bridging the information on these two structures. We have followed in different vertebrates the evolutionary trajectory of notochord genes identified in the invertebrate chordate Ciona, and we have evaluated the extent of conservation of their expression in notochord cells. Our results have uncovered evolutionarily conserved markers of both notochord development and aging/degeneration of the nuclei pulposi.

Indexed as

ChordataNucleus PulposusAnimalsGene ExpressionNotochordPilot ProjectsCionaCoroninHumanMouseNotochordNucleus pulposusPhipRgmRgsTmodXenopusZebrafish

Identifiers

PMID37891482
PMCPMC10605842

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.