Evidence map›Paper›PMID 37891474›Full record

ArticleBMC genomics2023

Construction of a high-density genetic linkage map and QTL mapping of growth and cold tolerance traits in Takifugu fasciatus.

Ying Zhang, Jie Li, Peng Chu, Ruhua Shang, Shaowu Yin, Tao Wang

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Ying ZhangCollege of Marine Science and Engineering, Nanjing Normal University, Nanjing, 210023, Jiangsu, China.
Jie LiCollege of Marine Science and Engineering, Nanjing Normal University, Nanjing, 210023, Jiangsu, China.
Peng ChuCollege of Marine Science and Engineering, Nanjing Normal University, Nanjing, 210023, Jiangsu, China.
Ruhua ShangCollege of Marine Science and Engineering, Nanjing Normal University, Nanjing, 210023, Jiangsu, China.
Shaowu YinCollege of Marine Science and Engineering, Nanjing Normal University, Nanjing, 210023, Jiangsu, China.
Tao WangCollege of Marine Science and Engineering, Nanjing Normal University, Nanjing, 210023, Jiangsu, China. seawater88@126.com.
Nanjing Normal University · CN

Funding

Jiangsu Agriculture Science and Technology Innovation Fund CX(22)2029Project of Seed Industry Revitalization in Jiangsu Province with grant number [JBGS[2021]034]
6 · The paper itself

Abstract

Takifugu fasciatus is an aquaculture species with high economic value. In recent years, problems such as environmental pollution and inbreeding have caused a serious decline in T. fasciatus germplasm resources. In this study, a high-density genetic linkage map was constructed by whole-genome resequencing. The map consists of 4891 bin markers distributed across 22 linkage groups (LGs), with a total genetic coverage of 2381.353 cM and a mean density of 0.535 cM. Quantitative trait locus (QTL) localization analysis showed that a total of 19 QTLs associated with growth traits of T. fasciatus in the genome-wide significance threshold range, distributed on 11 LGs. In addition, 11 QTLs associated with cold tolerance traits were identified, each scattered on a different LG. Furthermore, we used QTL localization analysis to screen out three candidate genes (IGF1, IGF2, ADGRB) related to growth in T. fasciatus. Meanwhile, we screened three candidate genes (HSP90, HSP70, and HMGB1) related to T. fasciatus cold tolerance. Our study can provide a theoretical basis for the selection and breeding of cold-tolerant or fast-growing T. fasciatus.

Indexed as

Quantitative Trait LociTakifuguAnimalsChromosome MappingGenetic LinkagePhenotypePolymorphism, Single NucleotideGenetic linkage mapGrowth and cold tolerance traitsQTL mappingTakifugu fasciatus

Identifiers

PMID37891474
PMCPMC10604518
OpenAlexW4387996856

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.