Evidence map›Paper›PMID 37890492›Full record

ArticleCancer cell2023

Tumor sequencing of African ancestry reveals differences in clinically relevant alterations across common cancers.

Evelyn Jiagge, Dexter X Jin, Justin Y Newberg, Tomin Perea-Chamblee, Kelly R Pekala, Christopher Fong, Michele Waters, David Ma, Yvonne Dei-Adomakoh, Gilles Erb and 16 more

Open access · hybridAbstract read
In one paragraph

Article in Cancer cell, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed, 1 pooled it
8.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 1 synthesis or guideline pooled it, 34 citations in OpenAlex.

  1. Pooled it
  2. The Landscape of Genomic and Socioeconomic Variables in Patients with Colorectal Cancer Based on Genetic Ancestry.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Clinicogenomic Landscape and Function ofJCO precision oncology · 2026
    Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Review
  12. Review
  13. Review
  14. Cancer Research Funding in Africa.Communications medicine · 2025
    Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors at 9 institutions in 7 countries.

Evelyn JiaggeHematology/Oncology Division, Department of Medicine, Henry Ford Health System, Detroit, MI, USA. Electronic address: ejiagge1@hfhs.org.
Dexter X JinComputational Discovery, Foundation Medicine, Inc., Cambridge, MA, USA. Electronic address: djin@foundationmedicine.com.
Justin Y NewbergComputational Discovery, Foundation Medicine, Inc., Cambridge, MA, USA.
Tomin Perea-ChambleeComputational Oncology, Department of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Kelly R PekalaComputational Oncology, Department of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer Center, New York, NY, USA; Department of Surgery, Urology Service, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Christopher FongComputational Oncology, Department of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Michele WatersComputational Oncology, Department of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
David MaComputational Oncology, Department of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Yvonne Dei-AdomakohDepartment of Haematology, University of Ghana Medical School, Accra, Ghana.
Gilles ErbGlobal Product Development Medical Affairs - Oncology, F. Hoffmann-La Roche Ltd, Basel, Switzerland.
Kanika S AroraMarie-Josée and Henry R. Kravis Center for Molecular Oncology, Memorial Sloan Kettering Cancer, New York, NY, USA.
Sophia L MaundComputational Sciences, Genentech, Inc., South San Francisco, CA, USA.
Njoki NjirainiDepartment of Oncology, Kenyatta University Teaching Research and Referral Hospital, Nairobi, Kenya.
Atara NtekimDepartment of Radiation Oncology, University of Ibadan, Ibadan, Nigeria.
Susie KimComputational Oncology, Department of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Xuechun BaiComputational Oncology, Department of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Marlene ThomasGlobal Product Development Medical Affairs - Oncology, F. Hoffmann-La Roche Ltd, Basel, Switzerland.
Ronwyn van EedenDepartment of Medical Oncology, Chris Hani Academic Baragwanath Hospital, Johannesburg, South Africa.
Priti HegdeComputational Discovery, Foundation Medicine, Inc., Cambridge, MA, USA.
Justin JeeComputational Oncology, Department of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer Center, New York, NY, USA; Department of Medicine, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Debyani ChakravartyMarie-Josée and Henry R. Kravis Center for Molecular Oncology, Memorial Sloan Kettering Cancer, New York, NY, USA; Department of Pathology and Laboratory Medicine, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Nikolaus SchultzComputational Oncology, Department of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Michael F BergerMarie-Josée and Henry R. Kravis Center for Molecular Oncology, Memorial Sloan Kettering Cancer, New York, NY, USA; Department of Pathology and Laboratory Medicine, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Garrett M FramptonComputational Discovery, Foundation Medicine, Inc., Cambridge, MA, USA.
Ethan S SokolComputational Discovery, Foundation Medicine, Inc., Cambridge, MA, USA.
Jian Carrot-ZhangComputational Oncology, Department of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer Center, New York, NY, USA; Clinial Genetics, Department of Medicine, Memorial Sloan Kettering Cancer Center, New York, NY, USA. Electronic address: carrotj@mskcc.org.
Memorial Sloan Kettering Cancer Center · USFoundation Medicine (United States)Roche (Switzerland) · CHChris Hani Baragwanath Hospital · ZADrug Discovery Laboratory (Norway) · NOHenry Ford Health System · USKenyatta University · KEUniversity of Ghana · GHUniversity of Ibadan · NG

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Hongbiao Carl Lekaye · 1985 to 2026
$347.4M
Training and Career Development CoreU54CA132378 · NCI · CITY COLLEGE OF NEW YORK · PI Bao Q Vuong · 2008 to 2026
$28.9M
Training and Career Development and Education CoreU54CA137788 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI ADRIANA ESPINOSA, FRANCESCA M GANY · 2008 to 2026
$28.1M
UROLOGY ONCOLOGY RESEARCH TRAINING GRANTT32CA082088 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Brett Stewart Carver · 1999 to 2026
$7.1M
Understanding Ancestral Contribution to Lung AdenocarcinomaR00CA259223 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI ZHANG, JIAN · 2022 to 2024
$738k
Genomics of Renal Cancer in Patients of African AncestryR21CA280577 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI TAYLOR, ALISON M., ZHANG, JIAN · 2023 to 2024
$456k
NCI NIH HHS P30 CA008748NCI NIH HHS R00 CA259223NCI NIH HHS R21 CA280577NCI NIH HHS T32 CA082088NCI NIH HHS U54 CA132378NCI NIH HHS U54 CA137788
6 · The paper itself

Abstract

Cancer genomes from patients with African (AFR) ancestry have been poorly studied in clinical research. We leverage two large genomic cohorts to investigate the relationship between genomic alterations and AFR ancestry in six common cancers. Cross-cancer type associations, such as an enrichment of MYC amplification with AFR ancestry in lung, breast, and prostate cancers, and depletion of BRAF alterations are observed in colorectal and pancreatic cancers. There are differences in actionable alterations, such as depletion of KRAS G12C and EGFR L858R, and enrichment of ROS1 fusion with AFR ancestry in lung cancers. Interestingly, in lung cancer, KRAS mutations are less common in both smokers and non-smokers with AFR ancestry, whereas the association of TP53 mutations with AFR ancestry is only seen in smokers, suggesting an ancestry-environment interaction that modifies driver rates. Our study highlights the need to increase representation of patients with AFR ancestry in drug development and biomarker discovery.

Indexed as

Lung NeoplasmsProtein-Tyrosine KinasesHumansMaleMutationProto-Oncogene ProteinsProto-Oncogene Proteins p21(ras)Protein-Tyrosine KinasesProto-Oncogene ProteinsProto-Oncogene Proteins p21(ras)African ancestrydriver alterationnext-generation sequencingprecision oncologyreal-world data

Identifiers

PMID37890492
PMCPMC11097212
OpenAlexW4387956489

What OpenQuestion holds

Textmetadata
LicenceTDM
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.