Evidence map›Paper›PMID 37889899›Full record

ArticlePLoS computational biology2023

Efficient multi-fidelity computation of blood coagulation under flow.

Manuel Guerrero-Hurtado, Manuel Garcia-Villalba, Alejandro Gonzalo, Pablo Martinez-Legazpi, Andrew M Kahn, Elliot McVeigh, Javier Bermejo, Juan C Del Alamo, Oscar Flores

Open access · goldAbstract read
In one paragraph

Article in PLoS computational biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
4.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 6 institutions in 3 countries.

Manuel Guerrero-HurtadoDepartment of Aerospace Engineering, Universidad Carlos III de Madrid, Leganés, Spain.ORCID 0009-0004-7664-8484
Manuel Garcia-VillalbaInstitute of Fluid Mechanics and Heat Transfer, TU Wien, Vienna, Austria.ORCID 0000-0002-6953-2270
Alejandro GonzaloDepartment of Mechanical Engineering, University of Washington, Seattle, Washington, United States of America.
Pablo Martinez-LegazpiDepartment of Mathematical Physics and Fluids, Facultad de Ciencias, Universidad Nacional de Educación a Distancia, UNED, Spain.
Andrew M KahnDivision of Cardiovascular Medicine, University of California San Diego, La Jolla, California, United States of America.
Elliot McVeighDivision of Cardiovascular Medicine, University of California San Diego, La Jolla, California, United States of America.
Javier BermejoCIBERCV, Madrid, Spain.
Juan C Del AlamoDepartment of Mechanical Engineering, University of Washington, Seattle, Washington, United States of America.ORCID 0000-0001-5683-0239
Oscar FloresDepartment of Aerospace Engineering, Universidad Carlos III de Madrid, Leganés, Spain.ORCID 0000-0003-2365-0738
Universidad Carlos III de Madrid · ESUniversity of California San Diego · USUniversity of Washington · USTU Wien · ATUniversidad Complutense de Madrid · ESUniversidad Nacional de Educación a Distancia · ES

Funding

Mechanistic Relationships Between Fibrosis, Fibrillation, and Stroke: Multi-Scale, Multi-Physics SimulationsR01HL158667 · NHLBI · UNIVERSITY OF WASHINGTON · PI Patrick M Boyle · 2022 to 2026
$3.1M
Patient-specific thrombosis risk in atrial fibrillation by 4D CT imaging of atrial kinetics combined with computational fluid dynamicsR01HL160024 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DEL ALAMO, JUAN CARLOS, KAHN, ANDREW · 2021 to 2024
$2.7M
NHLBI NIH HHS R01 HL158667NHLBI NIH HHS R01 HL160024
6 · The paper itself

Abstract

Clot formation is a crucial process that prevents bleeding, but can lead to severe disorders when imbalanced. This process is regulated by the coagulation cascade, a biochemical network that controls the enzyme thrombin, which converts soluble fibrinogen into the fibrin fibers that constitute clots. Coagulation cascade models are typically complex and involve dozens of partial differential equations (PDEs) representing various chemical species' transport, reaction kinetics, and diffusion. Solving these PDE systems computationally is challenging, due to their large size and multi-scale nature. We propose a multi-fidelity strategy to increase the efficiency of coagulation cascade simulations. Leveraging the slower dynamics of molecular diffusion, we transform the governing PDEs into ordinary differential equations (ODEs) representing the evolution of species concentrations versus blood residence time. We then Taylor-expand the ODE solution around the zero-diffusivity limit to obtain spatiotemporal maps of species concentrations in terms of the statistical moments of residence time, [Formula: see text], and provide the governing PDEs for [Formula: see text]. This strategy replaces a high-fidelity system of N PDEs representing the coagulation cascade of N chemical species by N ODEs and p PDEs governing the residence time statistical moments. The multi-fidelity order (p) allows balancing accuracy and computational cost providing a speedup of over N/p compared to high-fidelity models. Moreover, this cost becomes independent of the number of chemical species in the large computational meshes typical of the arterial and cardiac chamber simulations. Using a coagulation network with N = 9 and an idealized aneurysm geometry with a pulsatile flow as a benchmark, we demonstrate favorable accuracy for low-order models of p = 1 and p = 2. The thrombin concentration in these models departs from the high-fidelity solution by under 20% (p = 1) and 2% (p = 2) after 20 cardiac cycles. These multi-fidelity models could enable new coagulation analyses in complex flow scenarios and extensive reaction networks. Furthermore, it could be generalized to advance our understanding of other reacting systems affected by flow.

Indexed as

ThrombinThrombosisBlood CoagulationDiethylstilbestrolFibrinHumansDiethylstilbestroldiethylstilbestrol monophosphateFibrinThrombin

Identifiers

PMID37889899
PMCPMC10659216
OpenAlexW4387970742

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.