Evidence map›Paper›PMID 37888548›Full record

ArticleVeterinary sciences2023

Integrative Transcriptomics and Proteomics Analysis Reveals Immune Response Process in Bovine Viral Diarrhea Virus-1-Infected Peripheral Blood Mononuclear Cells.

Kang Zhang, Jingyan Zhang, Lei Wang, Qiang Liang, Yuhui Niu, Linlin Gu, Yanming Wei, Jianxi Li

Open access · goldAbstract read
In one paragraph

Article in Veterinary sciences, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.1field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Kang ZhangCollege of Veterinary Medicine, Gansu Agricultural University, Lanzhou 730070, China.
Jingyan ZhangLanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences, Lanzhou 730050, China.
Lei WangCollege of Veterinary Medicine, Gansu Agricultural University, Lanzhou 730070, China.
Qiang LiangCollege of Veterinary Medicine, Shandong Vocational Animal Science and Veterinary College, Weifang 261061, China.
Yuhui NiuCollege of Veterinary Medicine, Gansu Agricultural University, Lanzhou 730070, China.
Linlin GuShenzhen Bioeasy Biotechnology Co., Ltd., Shenzhen 518100, China.
Yanming WeiCollege of Veterinary Medicine, Gansu Agricultural University, Lanzhou 730070, China.
Jianxi LiLanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences, Lanzhou 730050, China.
Chinese Academy of Agricultural Sciences · CNGansu Agricultural University · CNLanzhou Institute of Husbandry and Pharmaceutical Sciences · CNShenzhen Bioeasy Biotechnology (China) · CN

Funding

Gansu Province Science and Technology Foundation for Youths No. 21JR7RA030Innovation Project of Traditional Chinese Veterinary Medicine and Clinical Science No. CAAS -ASTIP-2015-LIHPSNational Key Research and Development Plan No. 2022YFD1801102National Natural Science Foundation of China No. 32172903National Natural Science Foundation of China No. 32202848The Basic service Fund of CAAS No. 1610322023023The earmarked fund for CARS No. 36The Science and Technology Innovation Project of CAAS Collaborative Innovation No. CAAS-XTCX2016011-01-09
6 · The paper itself

Abstract

Bovine viral diarrhea virus (BVDV) causes bovine viral diarrhea-mucosal disease, inflicting substantial economic losses upon the global cattle industry. Peripheral blood mononuclear cells (PBMCs) are the central hub for immune responses during host-virus infection and have been recognized as crucial targets for BVDV infection. In order to elucidate the dynamics of host-BVDV-1 interaction, this study harnessed RNA-seq and iTRAQ methods to acquire an extensive dataset of transcriptomics and proteomics data from samples of BVDV-1-infected PBMCs at the 12-h post-infection mark. When compared to mock-infected PBMCs, we identified 344 differentially expressed genes (DEGs: a total of 234 genes with downregulated expression and 110 genes with upregulated expression) and 446 differentially expressed proteins (DEPs: a total of 224 proteins with downregulated expression and 222 proteins with upregulated expression). Selected DEGs and DEPs were validated through quantitative reverse transcriptase-polymerase chain reaction and parallel reaction monitoring. Gene ontology annotation and KEGG enrichment analysis underscored the significant enrichment of DEGs and DEPs in various immunity-related signaling pathways, including antigen processing and presentation, complement and coagulation cascades, cytokine-cytokine receptor interaction, and the NOD-like receptor signaling pathway, among others. Further analysis unveiled that those DEGs and DEPs with downregulated expression were predominantly associated with pathways such as complement and coagulation cascades, the interleukin-17 signaling pathway, cytokine-cytokine receptor interaction, the PI3K-Akt signaling pathway, the tumor necrosis factor signaling pathway, and the NOD-like receptor signaling pathway. Conversely, upregulated DEGs and DEPs were chiefly linked to metabolic pathways, oxidative phosphorylation, complement and coagulation cascades, and the RIG-I-like receptor signaling pathway. These altered genes and proteins shed light on the intense host-virus conflict within the immune realm. Our transcriptomics and proteomics data constitute a significant foundation for delving further into the interaction mechanism between BVDV and its host.

Indexed as

BVDVperipheral blood mononuclear cellsproteomicstranscriptomics

Identifiers

PMID37888548
PMCPMC10611041
OpenAlexW4387131844

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.