Evidence map›Paper›PMID 37887715›Full record

ArticlePathogens (Basel, Switzerland)2023

Prevalence and Genomic Characterization of Rotavirus A from Domestic Pigs in Zambia: Evidence for Possible Porcine-Human Interspecies Transmission.

Joseph Ndebe, Hayato Harima, Herman Moses Chambaro, Michihito Sasaki, Junya Yamagishi, Annie Kalonda, Misheck Shawa, Yongjin Qiu, Masahiro Kajihara, Ayato Takada and 3 more

Open access · goldAbstract read
In one paragraph

Article in Pathogens (Basel, Switzerland), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Frontiers in microbiology · 2026
    Review
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 3 countries.

Joseph NdebeDepartment of Disease Control, School of Veterinary Medicine, University of Zambia, Lusaka 10101, Zambia.
Hayato HarimaLaboratory of Veterinary Public Health, Faculty of Agriculture, Tokyo University of Agriculture and Technology, Saiwai-cho 3-5-8, Fuchu, Tokyo 183-8509, Japan.ORCID 0000-0002-6704-4601
Herman Moses ChambaroCentral Veterinary Research Institute (CVRI), Ministry of Fisheries and Livestock, Lusaka 10101, Zambia.
Michihito SasakiDivision of Molecular Pathobiology, International Institute for Zoonosis Control, Hokkaido University, N20 W10, Sapporo 001-0020, Japan.ORCID 0000-0003-1607-2175
Junya YamagishiDivision of Collaboration and Education, International Institute for Zoonosis Control, Hokkaido University, N20 W10, Sapporo 001-0020, Japan.
Annie KalondaDepartment of Biomedical Sciences, School of Health Sciences, University of Zambia, Lusaka 10101, Zambia.ORCID 0000-0002-5540-469X
Misheck ShawaHokudai Center for Zoonosis Control in Zambia, School of Veterinary Medicine, University of Zambia, Lusaka 10101, Zambia.
Yongjin QiuNational Institute of Infectious Diseases, Management Department of Biosafety, Laboratory Animal, and Pathogen Bank, Toyama 1-23-1, Tokyo 162-8640, Japan.ORCID 0000-0001-8621-5472
Masahiro KajiharaHokudai Center for Zoonosis Control in Zambia, School of Veterinary Medicine, University of Zambia, Lusaka 10101, Zambia.ORCID 0000-0001-9478-0439
Ayato TakadaDepartment of Disease Control, School of Veterinary Medicine, University of Zambia, Lusaka 10101, Zambia.ORCID 0000-0003-2464-6642
Hirofumi SawaDepartment of Disease Control, School of Veterinary Medicine, University of Zambia, Lusaka 10101, Zambia.ORCID 0000-0003-2569-2755
Ngonda SaasaDepartment of Disease Control, School of Veterinary Medicine, University of Zambia, Lusaka 10101, Zambia.
Edgar SimulunduDepartment of Disease Control, School of Veterinary Medicine, University of Zambia, Lusaka 10101, Zambia.ORCID 0000-0001-9423-0816
Hokkaido University · JPUniversity of Zambia · ZMMinistry of Agriculture and Livestock · ZMNational Institute of Infectious Diseases · JPTokyo University of Agriculture and Technology · JP

Funding

Agency for Medical Research and Development (AMED) JP15fm0108008,JP20wm0125008,JP223fa627005Science and Technology Research Partnership for Sustainable Development (SA-TREPS) JP21jm0110019
6 · The paper itself

Abstract

Rotavirus is a major cause of diarrhea globally in animals and young children under 5 years old. Here, molecular detection and genetic characterization of porcine rotavirus in smallholder and commercial pig farms in the Lusaka Province of Zambia were conducted. Screening of 148 stool samples by RT-PCR targeting the VP6 gene revealed a prevalence of 22.9% (34/148). Further testing of VP6-positive samples with VP7-specific primers produced 12 positives, which were then Sanger-sequenced. BLASTn of the VP7 positives showed sequence similarity to porcine and human rotavirus strains with identities ranging from 87.5% to 97.1%. By next-generation sequencing, the full-length genetic constellation of the representative strains RVA/pig-wt/ZMB/LSK0137 and RVA/pig-wt/ZMB/LSK0147 were determined. Genotyping of these strains revealed a known Wa-like genetic backbone, and their genetic constellations were G4-P[6]-I5-R1-C1-M1-A8-N1-T1-E1-H1 and G9-P[13]-I5-R1-C1-M1-A8-N1-T1-E1-H1, respectively. Phylogenetic analysis revealed that these two viruses might have their ancestral origin from pigs, though some of their gene segments were related to human strains. The study shows evidence of reassortment and possible interspecies transmission between pigs and humans in Zambia. Therefore, the "One Health" surveillance approach for rotavirus A in animals and humans is recommended to inform the design of effective control measures.

Indexed as

genomic characterizationinterspecies transmissionporcinereassortmentrotavirus AZambia

Identifiers

PMID37887715
PMCPMC10609906
OpenAlexW4387106588

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.