Evidence map›Paper›PMID 37887346›Full record

ArticleCells2023

Differential Transcriptomic Signatures of Small Airway Cell Cultures Derived from IPF and COVID-19-Induced Exacerbation of Interstitial Lung Disease.

Katie Uhl, Shreya Paithankar, Dmitry Leshchiner, Tara E Jager, Mohamed Abdelgied, Bhavna Dixit, Raya Marashdeh, Dewen Luo-Li, Kaylie Tripp, Angela M Peraino and 9 more

Open access · goldAbstract read
In one paragraph

Article in Cells, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.6field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 2 institutions in 1 country.

Katie UhlDepartment of Pediatrics and Human Development, College of Human Medicine, Michigan State University, Grand Rapids, MI 49503, USA.
Shreya PaithankarDepartment of Pediatrics and Human Development, College of Human Medicine, Michigan State University, Grand Rapids, MI 49503, USA.ORCID 0000-0002-9247-7847
Dmitry LeshchinerDepartment of Pediatrics and Human Development, College of Human Medicine, Michigan State University, Grand Rapids, MI 49503, USA.
Tara E JagerCorewell Health Medical Group, Grand Rapids, MI 49503, USA.
Mohamed AbdelgiedDepartment of Pediatrics and Human Development, College of Human Medicine, Michigan State University, Grand Rapids, MI 49503, USA.ORCID 0000-0002-5401-1608
Bhavna DixitDepartment of Pediatrics and Human Development, College of Human Medicine, Michigan State University, Grand Rapids, MI 49503, USA.
Raya MarashdehDepartment of Pediatrics and Human Development, College of Human Medicine, Michigan State University, Grand Rapids, MI 49503, USA.
Dewen Luo-LiDepartment of Pediatrics and Human Development, College of Human Medicine, Michigan State University, Grand Rapids, MI 49503, USA.
Kaylie TrippDepartment of Pediatrics and Human Development, College of Human Medicine, Michigan State University, Grand Rapids, MI 49503, USA.
Angela M PerainoCorewell Health Medical Group, Grand Rapids, MI 49503, USA.
Maximiliano Tamae KakazuCorewell Health Medical Group, Grand Rapids, MI 49503, USA.ORCID 0000-0003-4943-1656
Cameron LawsonCorewell Health Medical Group, Grand Rapids, MI 49503, USA.ORCID 0000-0002-9253-3343
Dave W CheslaCorewell Health Medical Group, Grand Rapids, MI 49503, USA.
Ningzhi Luo-LiDepartment of Pediatrics and Human Development, College of Human Medicine, Michigan State University, Grand Rapids, MI 49503, USA.
Edward T MurphyCorewell Health Medical Group, Grand Rapids, MI 49503, USA.
Jeremy ProkopDepartment of Pediatrics and Human Development, College of Human Medicine, Michigan State University, Grand Rapids, MI 49503, USA.
Bin ChenDepartment of Pediatrics and Human Development, College of Human Medicine, Michigan State University, Grand Rapids, MI 49503, USA.
Reda E GirgisCorewell Health Medical Group, Grand Rapids, MI 49503, USA.
Xiaopeng LiDepartment of Pediatrics and Human Development, College of Human Medicine, Michigan State University, Grand Rapids, MI 49503, USA.
Michigan State University · USSpectrum Health · US

Funding

Role of disrupted ASL pH regulation in small airways in CF lung disease pathogenesisR01HL153165 · NHLBI · MICHIGAN STATE UNIVERSITY · PI LI, XIAOPENG · 2021 to 2024
$2.2M
NHLBI NIH HHS HL153165-01A1NHLBI NIH HHS R01 HL153165
6 · The paper itself

Abstract

Idiopathic pulmonary fibrosis (IPF) is a pathological condition wherein lung injury precipitates the deposition of scar tissue, ultimately leading to a decline in pulmonary function. Existing research indicates a notable exacerbation in the clinical prognosis of IPF patients following infection with COVID-19. This investigation employed bulk RNA-sequencing methodologies to describe the transcriptomic profiles of small airway cell cultures derived from IPF and post-COVID fibrosis patients. Differential gene expression analysis unveiled heightened activation of pathways associated with microtubule assembly and interferon signaling in IPF cell cultures. Conversely, post-COVID fibrosis cell cultures exhibited distinctive characteristics, including the upregulation of pathways linked to extracellular matrix remodeling, immune system response, and TGF-β1 signaling. Notably, BMP signaling levels were elevated in cell cultures derived from IPF patients compared to non-IPF control and post-COVID fibrosis samples. These findings underscore the molecular distinctions between IPF and post-COVID fibrosis, particularly in the context of signaling pathways associated with each condition. A better understanding of the underlying molecular mechanisms holds the promise of identifying potential therapeutic targets for future interventions in these diseases.

Indexed as

COVID-19Idiopathic Pulmonary FibrosisLung Diseases, InterstitialCell Culture TechniquesFibrosisGene Expression ProfilingHumansTranscriptomecoronavirusCOVID-19idiopathic pulmonary fibrosisILDinterstitial lung diseaseIPFRNA-sequencingTGF-β1

Identifiers

PMID37887346
PMCPMC10605205
OpenAlexW4387843674

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.