Evidence map›Paper›PMID 37886990›Full record

ArticleBiology2023

Optimizing Microsatellite Marker Panels for Genetic Diversity and Population Genetic Studies: An Ant Colony Algorithm Approach with Polymorphic Information Content.

Ryan Rasoarahona, Pish Wattanadilokchatkun, Thitipong Panthum, Thanyapat Thong, Worapong Singchat, Syed Farhan Ahmad, Aingorn Chaiyes, Kyudong Han, Ekaphan Kraichak, Narongrit Muangmai and 4 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
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  4. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Ryan RasoarahonaAnimal Genomics and Bioresource Research Unit, Faculty of Science, Kasetsart University, 50 Ngamwongwan, Bangkok 10900, Thailand.
Pish WattanadilokchatkunAnimal Genomics and Bioresource Research Unit, Faculty of Science, Kasetsart University, 50 Ngamwongwan, Bangkok 10900, Thailand.
Thitipong PanthumAnimal Genomics and Bioresource Research Unit, Faculty of Science, Kasetsart University, 50 Ngamwongwan, Bangkok 10900, Thailand.
Thanyapat ThongAnimal Genomics and Bioresource Research Unit, Faculty of Science, Kasetsart University, 50 Ngamwongwan, Bangkok 10900, Thailand.
Worapong SingchatAnimal Genomics and Bioresource Research Unit, Faculty of Science, Kasetsart University, 50 Ngamwongwan, Bangkok 10900, Thailand.
Syed Farhan AhmadAnimal Genomics and Bioresource Research Unit, Faculty of Science, Kasetsart University, 50 Ngamwongwan, Bangkok 10900, Thailand.
Aingorn ChaiyesSchool of Agriculture and Cooperatives, Sukhothai Thammathirat Open University, Pakkret Nonthaburi 11120, Thailand.
Kyudong HanAnimal Genomics and Bioresource Research Unit, Faculty of Science, Kasetsart University, 50 Ngamwongwan, Bangkok 10900, Thailand.ORCID 0000-0001-6791-2408
Ekaphan KraichakAnimal Genomics and Bioresource Research Unit, Faculty of Science, Kasetsart University, 50 Ngamwongwan, Bangkok 10900, Thailand.ORCID 0000-0002-8437-2180
Narongrit MuangmaiAnimal Genomics and Bioresource Research Unit, Faculty of Science, Kasetsart University, 50 Ngamwongwan, Bangkok 10900, Thailand.ORCID 0000-0001-7954-7348
Akihiko KogaAnimal Genomics and Bioresource Research Unit, Faculty of Science, Kasetsart University, 50 Ngamwongwan, Bangkok 10900, Thailand.
Prateep DuengkaeAnimal Genomics and Bioresource Research Unit, Faculty of Science, Kasetsart University, 50 Ngamwongwan, Bangkok 10900, Thailand.
Agostinho AntunesInterdisciplinary Centre of Marine and Environmental Research, University of Porto, Terminal de Cruzeiros do Porto de Leixões, Av. General Norton de Matos, s/n, 4450-208 Porto, Portugal.ORCID 0000-0002-1328-1732
Kornsorn SrikulnathAnimal Genomics and Bioresource Research Unit, Faculty of Science, Kasetsart University, 50 Ngamwongwan, Bangkok 10900, Thailand.ORCID 0000-0002-5985-7258

Funding

Faculty of Science, Kasetsart University, Thailand 6501.0901.1/574High-Quality Research Graduate Development Cooperation Project between Kasetsart University and the National Science and Technology Development Agency (NSTDA) (6517400214) and (6417400247)Kasetsart University Research and Development Institute funds (FF(KU)25.64) FF(KU)25.64National Research Council of Thailand : High-Potential Research Team Grant Program N42A660605National Research Council of Thailand (NRCT) N42A650233the Betagro Group 6501.0901.1/68; the e-ASIA Joint Research Program P1851131the NSRF via the Program Management Unit for Human Resources & Institutional Development, Research and Innovation 25669999123064the NSTDA funds NSTDA P-19-52238 and JRA-CO-2564-14003-THthe Office of the Ministry of Higher Education, Science, Research, and Innovation; and the Inter-national SciKU Branding (ISB), Faculty of Science, Kasetsart University
6 · The paper itself

Abstract

Microsatellites are polymorphic and cost-effective. Optimizing reduced microsatellite panels using heuristic algorithms eases budget constraints in genetic diversity and population genetic assessments. Microsatellite marker efficiency is strongly associated with its polymorphism and is quantified as the polymorphic information content (

Indexed as

ant colony optimizationmarker selectionmicrosatellitepolymorphic informationpopulation genetics

Identifiers

PMID37886990
PMCPMC10604496

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.