Evidence map›Paper›PMID 37886685›Full record

ArticleFrontiers in genetics2023

Ensemble learning-based approach for automatic classification of termite mushrooms.

Thi Kim Chi Duong, Van Lang Tran, The Bao Nguyen, Thi Thuy Nguyen, Ngoc Trung Kien Ho, Thanh Q Nguyen

Open access · goldAbstract read
In one paragraph

Article in Frontiers in genetics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.6field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 citations in OpenAlex.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Thi Kim Chi DuongDepartment of Information Technology, Lac Hong University, Dong Nai Province, Vietnam.
Van Lang TranHUFLIT Journal of Science, Ho Chi Minh City University of Foreign Languages and Information Technology, Ho Chi Minh City, Vietnam.
The Bao NguyenFaculty of Engineering and Technology, Thu Dau Mot University, Binh Duong Province, Vietnam.
Thi Thuy NguyenFaculty of Engineering and Technology, Thu Dau Mot University, Binh Duong Province, Vietnam.
Ngoc Trung Kien HoFaculty of Engineering and Technology, Thu Dau Mot University, Binh Duong Province, Vietnam.
Thanh Q NguyenDepartment of Railway-Metro Engineering, Ho Chi Minh City University of Transport, Ho Chi Minh City, Vietnam.
Ho Chi Minh City University of Transport · VNThu Dau Mot UniversityHo Chi Minh City University of Foreign Languages and Information Technology · VN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Termite mushrooms are edible fungi that provide significant economic, nutritional, and medicinal value. However, identifying these mushroom species based on morphology and traditional knowledge is ineffective due to their short development time and seasonal nature. This study proposes a novel method for classifying termite mushroom species. The method utilizes Gradient Boosting machine learning techniques and sequence encoding on the Internal Transcribed Spacer (ITS) gene dataset to construct a machine learning model for identifying termite mushroom species. The model is trained using ITS sequences obtained from the National Center for Biotechnology Information (NCBI) and the Barcode of Life Data Systems (BOLD). Ensemble learning techniques are applied to classify termite mushroom species. The proposed model achieves good results on the test dataset, with an accuracy of 0.91 and an average AUCROC value of 0.99. To validate the model, eight ITS sequences collected from termite mushroom samples in An Linh commune, Phu Giao district, Binh Duong province, Vietnam were used as the test data. The results show consistent species identification with predictions from the NCBI BLAST software. The results of species identification were consistent with the NCBI BLAST prediction software. This machine-learning model shows promise as an automatic solution for classifying termite mushroom species. It can help researchers better understand the local growth of these termite mushrooms and develop conservation plans for this rare and valuable plant resource.

Indexed as

DNA barcodeensemble learningITSmolecular biologytermite fungal taxonomytermite mushrooms

Identifiers

PMID37886685
PMCPMC10598762
OpenAlexW4387539126

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.