Evidence map›Paper›PMID 37886520›Full record

ArticleResearch square2023

Biomolecular condensates form spatially inhomogeneous network fluids.

Furqan Dar, Samuel R Cohen, Diana M Mitrea, Aaron H Phillips, Gergely Nagy, Wellington C Leite, Christopher B Stanley, Jeong-Mo Choi, Richard W Kriwacki, Rohit V Pappu

Abstract readPreprint
In one paragraph

Article in Research square, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors.

Furqan DarDepartment of Biomedical Engineering and Center for Biomolecular Condensates, Washington University in St. Louis, St. Louis, MO 63130, USA.
Samuel R CohenDepartment of Biomedical Engineering and Center for Biomolecular Condensates, Washington University in St. Louis, St. Louis, MO 63130, USA.
Diana M MitreaDewpoint Therapeutics Inc., 451 D Street, Boston, MA 02210, USA.ORCID 0000-0003-4501-0846
Aaron H PhillipsDepartment of Structural Biology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA.
Gergely NagyNeutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA.
Wellington C LeiteNeutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA.
Christopher B StanleyComputational Sciences and Engineering Division, Oak Ridge National Laboratory, Oak Ridge, TN 37830.ORCID 0000-0002-4226-7710
Jeong-Mo ChoiDepartment of Chemistry and Chemistry Institute for Functional Materials, Pusan National University, Busan 46241, Republic of Korea.
Richard W KriwackiDepartment of Structural Biology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA.ORCID 0000-0002-9798-6018
Rohit V PappuDepartment of Biomedical Engineering and Center for Biomolecular Condensates, Washington University in St. Louis, St. Louis, MO 63130, USA.ORCID 0000-0003-2568-1378

Funding

Viral Vector Technology (VVTSR)P30CA021765 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI CHARLES ROBERTS · 1985 to 2026
$166.9M
Understanding Phase Separation in Biology and DiseaseR35GM131891 · NIGMS · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI RICHARD W KRIWACKI · 2019 to 2026
$3.3M
TRAINING IN REGENERATIVE MEDICINET32EB028092 · NIBIB · WASHINGTON UNIVERSITY · PI Farshid Guilak · 2020 to 2026
$2.0M
The Molecular Basis of Liquid-like Structure of the NucleolusR01GM115634 · NIGMS · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI KRIWACKI, RICHARD W · 2015 to 2018
$1.8M
NCI NIH HHS P30 CA021765NIBIB NIH HHS T32 EB028092NIGMS NIH HHS R01 GM115634NIGMS NIH HHS R35 GM131891
6 · The paper itself

Abstract

The functions of biomolecular condensates are thought to be influenced by their material properties, and these are in turn determined by the multiscale structural features within condensates. However, structural characterizations of condensates are challenging, and hence rarely reported. Here, we deploy a combination of small angle neutron scattering, fluorescence recovery after photobleaching, and bespoke coarse-grained molecular dynamics simulations to provide structural descriptions of model condensates that mimic nucleolar granular components (GCs). We show that facsimiles of GCs are network fluids featuring spatial inhomogeneities across hierarchies of length scales that reflect the contributions of distinct protein and peptide domains. The network-like inhomogeneous organization is characterized by a coexistence of liquid- and gas-like macromolecular densities that engenders bimodality of internal molecular dynamics. These insights, extracted from a combination of approaches, suggest that condensates formed by multivalent proteins share features with network fluids formed by associative systems such as patchy or hairy colloids.

Identifiers

PMID37886520
PMCPMC10602126

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.